Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | NYQ90_RS09410 | Genome accession | NZ_CP103791 |
| Coordinates | 1976358..1976963 (+) | Length | 201 a.a. |
| NCBI ID | WP_001202375.1 | Uniprot ID | A0A5I0N148 |
| Organism | Salmonella enterica subsp. enterica serovar Infantis strain MRS17_00712 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1942759..1985223 | 1976358..1976963 | within | 0 |
Gene organization within MGE regions
Location: 1942759..1985223
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYQ90_RS09280 (NYQ90_09280) | ldtD | 1942799..1944646 (+) | 1848 | WP_000925896.1 | L,D-transpeptidase | - |
| NYQ90_RS09285 (NYQ90_09285) | - | 1944906..1945454 (+) | 549 | WP_000357052.1 | YcbK family protein | - |
| NYQ90_RS09290 (NYQ90_09290) | - | 1945482..1946129 (+) | 648 | WP_001109471.1 | MBL fold metallo-hydrolase | - |
| NYQ90_RS09295 (NYQ90_09295) | - | 1946227..1947480 (+) | 1254 | Protein_1820 | IS3-like element ISSen1 family transposase | - |
| NYQ90_RS09300 (NYQ90_09300) | aspC | 1947504..1948694 (-) | 1191 | WP_000462653.1 | aspartate transaminase | - |
| NYQ90_RS09305 (NYQ90_09305) | ompF | 1948879..1949970 (-) | 1092 | WP_000977709.1 | porin OmpF | - |
| NYQ90_RS09310 (NYQ90_09310) | asnS | 1950577..1951977 (-) | 1401 | WP_023993514.1 | asparagine--tRNA ligase | - |
| NYQ90_RS09315 (NYQ90_09315) | - | 1952178..1952639 (-) | 462 | WP_000762342.1 | Lrp/AsnC family transcriptional regulator | - |
| NYQ90_RS09320 (NYQ90_09320) | dpaL | 1952956..1954170 (+) | 1215 | WP_020438006.1 | diaminopropionate ammonia-lyase | - |
| NYQ90_RS09325 (NYQ90_09325) | - | 1954416..1955849 (+) | 1434 | WP_000893191.1 | sodium:alanine symporter family protein | - |
| NYQ90_RS09330 (NYQ90_09330) | pncB | 1955930..1957132 (-) | 1203 | WP_023993513.1 | nicotinate phosphoribosyltransferase | - |
| NYQ90_RS09335 (NYQ90_09335) | pepN | 1957399..1960011 (+) | 2613 | WP_023993512.1 | aminopeptidase N | - |
| NYQ90_RS09340 (NYQ90_09340) | pyrD | 1960219..1961229 (+) | 1011 | WP_000291723.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| NYQ90_RS09345 (NYQ90_09345) | zapC | 1961395..1961937 (+) | 543 | WP_023993511.1 | cell division protein ZapC | - |
| NYQ90_RS09350 (NYQ90_09350) | - | 1961934..1963043 (-) | 1110 | WP_023993510.1 | YcbX family protein | - |
| NYQ90_RS09355 (NYQ90_09355) | rlmKL | 1963142..1965250 (+) | 2109 | WP_023993509.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| NYQ90_RS09360 (NYQ90_09360) | - | 1965263..1967170 (+) | 1908 | WP_023993508.1 | ABC transporter ATP-binding protein | - |
| NYQ90_RS09365 (NYQ90_09365) | pqiA | 1967185..1968438 (+) | 1254 | WP_000333152.1 | membrane integrity-associated transporter subunit PqiA | - |
| NYQ90_RS09370 (NYQ90_09370) | pqiB | 1968443..1970083 (+) | 1641 | WP_000433414.1 | intermembrane transport protein PqiB | - |
| NYQ90_RS09375 (NYQ90_09375) | pqiC | 1970080..1970643 (+) | 564 | WP_000759136.1 | membrane integrity-associated transporter subunit PqiC | - |
| NYQ90_RS09380 (NYQ90_09380) | rmf | 1970899..1971066 (+) | 168 | WP_001537784.1 | ribosome modulation factor | - |
| NYQ90_RS09385 (NYQ90_09385) | fabA | 1971166..1971684 (-) | 519 | WP_000227928.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| NYQ90_RS09390 (NYQ90_09390) | - | 1971753..1973513 (-) | 1761 | WP_000156457.1 | Lon protease family protein | - |
| NYQ90_RS09395 (NYQ90_09395) | matP | 1973699..1974151 (+) | 453 | WP_000877172.1 | macrodomain Ter protein MatP | - |
| NYQ90_RS09400 (NYQ90_09400) | ompA | 1974223..1975275 (-) | 1053 | WP_001670727.1 | porin OmpA | - |
| NYQ90_RS09405 (NYQ90_09405) | sulA | 1975632..1976141 (-) | 510 | WP_000288732.1 | SOS-induced cell division inhibitor SulA | - |
| NYQ90_RS09410 (NYQ90_09410) | sxy/tfoX | 1976358..1976963 (+) | 606 | WP_001202375.1 | TfoX/Sxy family DNA transformation protein | Regulator |
| NYQ90_RS09415 (NYQ90_09415) | yccS | 1976950..1979103 (-) | 2154 | WP_000950876.1 | YccS family putative transporter | - |
| NYQ90_RS09420 (NYQ90_09420) | - | 1979122..1979568 (-) | 447 | WP_023993507.1 | YccF domain-containing protein | - |
| NYQ90_RS09425 (NYQ90_09425) | helD | 1979692..1981746 (+) | 2055 | WP_023993506.1 | DNA helicase IV | - |
| NYQ90_RS09430 (NYQ90_09430) | mgsA | 1981782..1982240 (-) | 459 | WP_023993505.1 | methylglyoxal synthase | - |
| NYQ90_RS09435 (NYQ90_09435) | - | 1982335..1982997 (-) | 663 | WP_000847719.1 | DUF2057 family protein | - |
| NYQ90_RS09440 (NYQ90_09440) | - | 1983171..1983584 (+) | 414 | WP_001537782.1 | CoA-binding protein | - |
| NYQ90_RS09445 (NYQ90_09445) | hspQ | 1983629..1983946 (-) | 318 | WP_000561983.1 | heat shock protein HspQ | - |
| NYQ90_RS09450 (NYQ90_09450) | rlmI | 1984004..1985215 (-) | 1212 | WP_000140480.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23174.94 Da Isoelectric Point: 8.7403
>NTDB_id=725138 NYQ90_RS09410 WP_001202375.1 1976358..1976963(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Infantis strain MRS17_00712]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
Nucleotide
Download Length: 606 bp
>NTDB_id=725138 NYQ90_RS09410 WP_001202375.1 1976358..1976963(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Infantis strain MRS17_00712]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
75.879 |
99.005 |
0.751 |