Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NYS58_RS10675 Genome accession   NZ_CP103790
Coordinates   2265188..2265823 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 8247     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2260188..2270823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYS58_RS10660 - 2260894..2262138 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  NYS58_RS10665 - 2262226..2262759 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  NYS58_RS10670 comA 2262890..2265115 (+) 2226 WP_003138588.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NYS58_RS10675 exbB 2265188..2265823 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NYS58_RS10680 - 2265820..2266260 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  NYS58_RS10685 lpxK 2266260..2267258 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  NYS58_RS10690 - 2267296..2267481 (+) 186 WP_003091157.1 Trm112 family protein -
  NYS58_RS10695 kdsB 2267481..2268245 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NYS58_RS10700 - 2268245..2268709 (+) 465 WP_003138590.1 low molecular weight protein-tyrosine-phosphatase -
  NYS58_RS10705 murB 2268706..2269725 (+) 1020 WP_003119807.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=725106 NYS58_RS10675 WP_003091163.1 2265188..2265823(+) (exbB) [Pseudomonas aeruginosa strain 8247]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725106 NYS58_RS10675 WP_003091163.1 2265188..2265823(+) (exbB) [Pseudomonas aeruginosa strain 8247]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81