Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   NYS59_RS24545 Genome accession   NZ_CP103789
Coordinates   5265125..5265682 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain 2718     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5260125..5270682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYS59_RS24525 pilR 5261401..5262738 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  NYS59_RS24530 thiO 5262784..5263878 (-) 1095 WP_023114840.1 glycine oxidase ThiO -
  NYS59_RS24535 - 5264013..5264522 (+) 510 WP_128652212.1 Tfp pilus assembly protein FimT/FimU -
  NYS59_RS24540 - 5264628..5265134 (+) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  NYS59_RS24545 pilV 5265125..5265682 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  NYS59_RS24550 pilW 5265679..5266503 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  NYS59_RS24555 pilX 5266500..5267087 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  NYS59_RS24560 pilY1 5267099..5270590 (+) 3492 WP_128652211.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=725086 NYS59_RS24545 WP_003094697.1 5265125..5265682(+) (pilV) [Pseudomonas aeruginosa strain 2718]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=725086 NYS59_RS24545 WP_003094697.1 5265125..5265682(+) (pilV) [Pseudomonas aeruginosa strain 2718]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978