Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   A6P39_RS28185 Genome accession   NZ_CP119133
Coordinates   6291001..6292734 (-) Length   577 a.a.
NCBI ID   WP_067039368.1    Uniprot ID   -
Organism   Streptomyces sp. FXJ1.172     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6286001..6297734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6P39_RS28175 (A6P39_028160) - 6287756..6289040 (+) 1285 Protein_5564 RNA polymerase sigma factor -
  A6P39_RS28180 (A6P39_028165) rcrQ 6289076..6291001 (-) 1926 WP_067039367.1 ABC transporter ATP-binding protein Regulator
  A6P39_RS28185 (A6P39_028170) rcrP 6291001..6292734 (-) 1734 WP_067039368.1 ABC transporter ATP-binding protein Regulator
  A6P39_RS28190 (A6P39_028175) - 6292898..6294337 (-) 1440 WP_067039369.1 FGGY family carbohydrate kinase -
  A6P39_RS28195 (A6P39_028180) - 6294411..6294716 (-) 306 WP_067039370.1 hypothetical protein -
  A6P39_RS28215 (A6P39_028200) - 6295775..6296173 (-) 399 WP_067039371.1 MerR family transcriptional regulator -
  A6P39_RS28220 (A6P39_028205) - 6296221..6297501 (+) 1281 WP_199840664.1 MFS transporter -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62516.87 Da        Isoelectric Point: 6.9613

>NTDB_id=725079 A6P39_RS28185 WP_067039368.1 6291001..6292734(-) (rcrP) [Streptomyces sp. FXJ1.172]
MLIRLLRAYLRPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTDYILSFGALMIGISLAQVVCNIGAVYFGA
RTAAALGRDVRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIVMALGLDVPLSGV
LVAVVPVLAICVTLIVRRLRPLFRSMQERLDTVNRVLREQISGNRVIRAFVRDEYEHGRFGKANTDLTEMQLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMRIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLGTDSSVVP
PGAPVSELRAHGHLEIRAAGFRYPGAEEPVLKSVGLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVNGVDVQ
QIDPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVSKLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIREADRIIVLDEGRVVGSGRHHELMATN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=725079 A6P39_RS28185 WP_067039368.1 6291001..6292734(-) (rcrP) [Streptomyces sp. FXJ1.172]
GTGCTCATACGACTCCTACGGGCCTATCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACTCTGAACGCGCACATCATCGACAACGGTGTCGTGAAGGGTGACACGGACTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTCGTGTGCAACATCGGCGCCGTGTACTTCGGTGCG
CGCACGGCCGCCGCGCTCGGGCGGGACGTGCGTGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGTGAGGTGGG
TCACTTCGGCGCTCCTTCTCTCATCACCCGTACGACGAACGACGTACAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTCGGCGGCATCGTGATGGCCCTCGGCCTGGACGTACCGCTGTCCGGGGTG
CTGGTGGCCGTGGTCCCGGTGCTCGCGATCTGCGTCACGCTCATCGTGCGCCGGCTGCGCCCGCTGTTCCGGTCGATGCA
GGAACGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCAGCGGCAACCGGGTGATCCGCGCCTTCGTGCGCGACG
AGTATGAGCACGGCCGGTTCGGGAAGGCGAACACCGATCTCACCGAGATGCAGCTGGCCACCGGCCGCATGCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTGGTGAACCTGTCGTCGATCGCGGTCGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCGGATCGGCGACCTGACGGCGTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCGTCCAGGAGGTACTCGGGACCGACTCGAGCGTGGTGCCG
CCCGGGGCGCCCGTCAGCGAGCTGCGCGCACACGGCCACCTGGAGATCCGGGCCGCCGGCTTCCGCTATCCGGGGGCCGA
GGAGCCGGTGCTGAAGTCCGTCGGCCTGGTGGCCCGGCCGGGTGAGACGACGGCCGTGATCGGCTCCACCGGCAGCGGCA
AGTCGACCCTGCTCGGGCTGGTCCCGCGGCTGTTCGACGCCACCGAGGGCGAGGTCCTCGTCAACGGCGTGGACGTCCAG
CAGATCGACCCGAAGCTGCTGGCGAGAACGGTCGGGCTGGTGCCGCAGAAGCCGTACCTGTTCGCCGGCACCGTCGCCAC
CAACCTGCGCTACGGCAACCCCGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGAGCAAGCTCGAGGGGGGCCTCGACGCGCCGATCGCGCAAGGAGGCACCAACGTCTCCGGCGGTCAGCGCCAGCGCCTC
GCGATCGCCCGCACCCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCGCTGCGCGCGGCCCTCGGCCGGGAGACCGCCGAGGCGACCGTCGTCATCGTCGCCCAGCGCGTGGCGACCATCC
GGGAGGCGGACCGGATCATCGTGCTGGACGAGGGCCGGGTCGTCGGCTCCGGCCGGCACCACGAGCTGATGGCGACCAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.235

100

0.383