Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A6P39_RS28180 Genome accession   NZ_CP119133
Coordinates   6289076..6291001 (-) Length   641 a.a.
NCBI ID   WP_067039367.1    Uniprot ID   -
Organism   Streptomyces sp. FXJ1.172     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6284076..6296001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6P39_RS28165 (A6P39_028150) - 6284490..6285755 (+) 1266 WP_067039364.1 FAD-dependent oxidoreductase -
  A6P39_RS28170 (A6P39_028155) dnaG 6285794..6287689 (+) 1896 WP_067039365.1 DNA primase -
  A6P39_RS28175 (A6P39_028160) - 6287756..6289040 (+) 1285 Protein_5564 RNA polymerase sigma factor -
  A6P39_RS28180 (A6P39_028165) rcrQ 6289076..6291001 (-) 1926 WP_067039367.1 ABC transporter ATP-binding protein Regulator
  A6P39_RS28185 (A6P39_028170) rcrP 6291001..6292734 (-) 1734 WP_067039368.1 ABC transporter ATP-binding protein Regulator
  A6P39_RS28190 (A6P39_028175) - 6292898..6294337 (-) 1440 WP_067039369.1 FGGY family carbohydrate kinase -
  A6P39_RS28195 (A6P39_028180) - 6294411..6294716 (-) 306 WP_067039370.1 hypothetical protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69660.27 Da        Isoelectric Point: 7.6133

>NTDB_id=725078 A6P39_RS28180 WP_067039367.1 6289076..6291001(-) (rcrQ) [Streptomyces sp. FXJ1.172]
MAGPMRMMAGQGPDQRSMDFKGSGKRLIGQFRPERLTIYGLLLCVVVSVGLNVIGPKILGKATDLVFSGIIGRQMPGGAT
KQQVLDRMRAHGQGSVADMLKSTDFTPGKGIDFGAVGNVLLLALAIFTVAGLLSAVATRLVNRAVNRTMFRLREQVQSKL
SRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWILALVALVTVPLSALVATRVGKR
SQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQQESAQQFAEQNEALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAGEQEADPVPGERPAELRGRVRLEH
VSFRYDPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIRRMTRDELRSGIGMVLQDTW
LFGGTIAENIAYGAPREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAADGAYARLYKAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=725078 A6P39_RS28180 WP_067039367.1 6289076..6291001(-) (rcrQ) [Streptomyces sp. FXJ1.172]
ATGGCCGGGCCCATGCGGATGATGGCCGGGCAGGGTCCCGACCAGCGCTCGATGGACTTCAAGGGGTCGGGCAAACGGCT
CATCGGCCAGTTCCGGCCCGAACGGCTCACGATCTACGGCCTGCTGCTGTGCGTGGTCGTCAGCGTGGGGCTGAACGTGA
TCGGCCCGAAGATCCTCGGTAAGGCCACCGACCTGGTCTTCTCCGGCATCATCGGCCGGCAGATGCCGGGCGGCGCCACC
AAGCAGCAGGTCCTCGACCGGATGCGCGCCCATGGCCAGGGCTCGGTCGCGGACATGCTCAAGAGCACCGACTTCACGCC
CGGCAAGGGCATCGACTTCGGCGCCGTCGGAAACGTCCTGCTGCTCGCGCTCGCCATCTTCACGGTCGCCGGTCTGCTGA
GCGCGGTGGCGACCCGGCTGGTCAACCGGGCCGTGAACCGCACGATGTTCCGGCTGCGCGAGCAGGTGCAGAGCAAGCTG
TCCCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGTGAGGTGCTCTCCCGCGCGACCAACGACATCGACAACAT
CGGCCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCATCGGTGTGCTGGCGATGATGTTCT
GGGTCTCCTGGATCCTGGCGCTGGTCGCGCTCGTCACCGTGCCGCTGTCGGCGCTGGTGGCGACGAGGGTCGGCAAGCGC
TCCCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTGAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTGTTCGGCCGGCAGCAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGAGGCGCTCTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGTGTGATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTACGTGCTGGTCGCCGTG
GTCGGCGGTCTGCGCGTCGCCTCCGGCTCGCTCTCCATCGGTGACGTCCAGGCCTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGTGTCGCCTCCGCCGAGCGGGTCTTCGAACTCC
TCGACGCCGGGGAGCAGGAGGCCGACCCGGTGCCGGGCGAGCGTCCGGCCGAGCTGCGCGGCCGGGTGCGCCTGGAGCAC
GTGTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGACCTCTCGCTCACGGTGGAGCCCGGTCACACGGTCGCGAT
CGTCGGCCCGACCGGCGCGGGCAAGACCACGCTGGTCAACCTCCTGATGCGGTTCTACGACGTCTCGGGCGGCCGGATCA
CCCTGGACGGCGTCGACATCCGGAGGATGACCCGCGACGAACTGCGGTCCGGGATCGGCATGGTGCTGCAGGACACCTGG
CTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCCCCGCGCGAGGTCACGCGTGGCGAGATCGAGGAGGCGGC
ACGGGCGGCGCACGCCGACCGGTTCATCCGCACCCTCCCCGACGGCTACGACACCGTGATCGACGACGAGGGCACGGGGG
TCAGCGCGGGCGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAGGCG
ACGAGTTCGGTGGACACCCGCACGGAGGTCCTGATCCAGAAGGCCATGGCCAAACTGGCCCACGGCCGTACCTCGTTCGT
CATCGCGCACCGGCTCTCCACGATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGCTCGATCGTGGAACAGGGCG
CGCACGCCGAGCTGCTGGCGGCCGACGGGGCGTACGCCCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTG
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.615

96.412

0.392