Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   JUD77_RS03640 Genome accession   NZ_AP024414
Coordinates   722491..723105 (+) Length   204 a.a.
NCBI ID   WP_005686751.1    Uniprot ID   -
Organism   Haemophilus influenzae strain TA8730     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 717491..728105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JUD77_RS03615 (TA8730_06930) - 718059..718577 (-) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -
  JUD77_RS03620 (TA8730_06940) aspS 718796..720562 (+) 1767 WP_071162808.1 aspartate--tRNA ligase -
  JUD77_RS03625 (TA8730_06950) nudB 720584..721057 (+) 474 WP_005659988.1 dihydroneopterin triphosphate diphosphatase -
  JUD77_RS03630 (TA8730_06960) - 721069..721809 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  JUD77_RS03635 (TA8730_06970) ruvC 721856..722428 (+) 573 WP_011271984.1 crossover junction endodeoxyribonuclease RuvC -
  JUD77_RS03640 (TA8730_06980) ruvA 722491..723105 (+) 615 WP_005686751.1 Holliday junction branch migration protein RuvA Machinery gene
  JUD77_RS03645 (TA8730_06990) ruvB 723113..724120 (+) 1008 WP_005659996.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  JUD77_RS03650 (TA8730_07000) - 724172..724459 (-) 288 WP_005694353.1 DUF5339 domain-containing protein -
  JUD77_RS03655 (TA8730_07010) xerD 724632..725525 (-) 894 WP_071162806.1 site-specific tyrosine recombinase XerD -
  JUD77_RS03660 (TA8730_07020) - 725556..726722 (-) 1167 WP_071162805.1 3-phenylpropionate MFS transporter -
  JUD77_RS03665 (TA8730_07030) proC 726722..727537 (-) 816 WP_071162804.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22575.32 Da        Isoelectric Point: 6.5030

>NTDB_id=72504 JUD77_RS03640 WP_005686751.1 722491..723105(+) (ruvA) [Haemophilus influenzae strain TA8730]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPVEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=72504 JUD77_RS03640 WP_005686751.1 722491..723105(+) (ruvA) [Haemophilus influenzae strain TA8730]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCGATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GTGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGTGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGTAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAGCAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(161-202)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373

Multiple sequence alignment