Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NYR91_RS13820 Genome accession   NZ_CP103784
Coordinates   2664425..2665171 (-) Length   248 a.a.
NCBI ID   WP_014477553.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2659425..2670171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS13795 (NYR91_13795) mreC 2659831..2660703 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  NYR91_RS13800 (NYR91_13800) mreB 2660734..2661747 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  NYR91_RS13805 (NYR91_13805) radC 2661839..2662534 (-) 696 WP_014477551.1 DNA repair protein RadC -
  NYR91_RS13810 (NYR91_13810) maf 2662571..2663140 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  NYR91_RS13815 (NYR91_13815) spoIIB 2663293..2664291 (-) 999 WP_014477552.1 stage II sporulation protein SpoIIB -
  NYR91_RS13820 (NYR91_13820) comC 2664425..2665171 (-) 747 WP_014477553.1 A24 family peptidase Machinery gene
  NYR91_RS13825 (NYR91_13825) folC 2665312..2666604 (-) 1293 WP_014477554.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NYR91_RS13830 (NYR91_13830) valS 2666664..2669306 (-) 2643 WP_041519452.1 valine--tRNA ligase -
  NYR91_RS13835 (NYR91_13835) - 2669754..2669945 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26439.97 Da        Isoelectric Point: 9.6311

>NTDB_id=725034 NYR91_RS13820 WP_014477553.1 2664425..2665171(-) (comC) [Bacillus subtilis strain RO-NN-1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPVAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGSAAVLTGRLATRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=725034 NYR91_RS13820 WP_014477553.1 2664425..2665171(-) (comC) [Bacillus subtilis strain RO-NN-1]
ATGCTATCCATTCTTTTTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGTAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACGTCGTTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGTTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTACGGGTCGGCAGCTGTTCTGACTGGTAGACTCGCTA
CAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

97.984

100

0.98