Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NYR91_RS12080 Genome accession   NZ_CP103784
Coordinates   2366289..2367092 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2361289..2372092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS12055 (NYR91_12055) glpQB 2362467..2363198 (-) 732 WP_014477293.1 glycerophosphodiester phosphodiesterase -
  NYR91_RS12060 (NYR91_12060) yqiI 2363277..2363897 (-) 621 WP_080009823.1 N-acetylmuramoyl-L-alanine amidase -
  NYR91_RS12065 (NYR91_12065) - 2363917..2364213 (-) 297 WP_014477295.1 hypothetical protein -
  NYR91_RS12070 (NYR91_12070) - 2364521..2364674 (+) 154 Protein_2335 hypothetical protein -
  NYR91_RS12075 (NYR91_12075) yqiG 2364747..2365865 (+) 1119 WP_041519388.1 NADH-dependent flavin oxidoreductase -
  NYR91_RS12080 (NYR91_12080) spo0A 2366289..2367092 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NYR91_RS12085 (NYR91_12085) spoIVB 2367368..2368648 (-) 1281 WP_014477299.1 SpoIVB peptidase -
  NYR91_RS12090 (NYR91_12090) recN 2368823..2370553 (-) 1731 WP_014477300.1 DNA repair protein RecN Machinery gene
  NYR91_RS12095 (NYR91_12095) argR 2370590..2371039 (-) 450 WP_014114358.1 arginine repressor ArgR -
  NYR91_RS12100 (NYR91_12100) yqxC 2371137..2371982 (-) 846 WP_014477301.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=725015 NYR91_RS12080 WP_003226427.1 2366289..2367092(-) (spo0A) [Bacillus subtilis strain RO-NN-1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=725015 NYR91_RS12080 WP_003226427.1 2366289..2367092(-) (spo0A) [Bacillus subtilis strain RO-NN-1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGTTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1