Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYR91_RS11070 Genome accession   NZ_CP103784
Coordinates   2185493..2186113 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2180493..2191113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS11030 (NYR91_11030) ptsA 2181625..2182131 (-) 507 WP_014477157.1 PTS glucose transporter subunit IIA -
  NYR91_RS11035 (NYR91_11035) ypqA 2182269..2182688 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  NYR91_RS11040 (NYR91_11040) sppG 2182709..2183086 (-) 378 WP_014477159.1 YppG family protein -
  NYR91_RS11045 (NYR91_11045) yppF 2183274..2183462 (+) 189 WP_003230690.1 YppF family protein -
  NYR91_RS11050 (NYR91_11050) yppE 2183501..2183872 (-) 372 WP_003246080.1 YppE family protein -
  NYR91_RS11055 (NYR91_11055) yppD 2183917..2184162 (-) 246 WP_004398488.1 YppD family protein -
  NYR91_RS11060 (NYR91_11060) sspM 2184361..2184465 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NYR91_RS11065 (NYR91_11065) yppC 2184490..2185452 (-) 963 WP_014477160.1 DUF2515 domain-containing protein -
  NYR91_RS11070 (NYR91_11070) recU 2185493..2186113 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  NYR91_RS11075 (NYR91_11075) ponA 2186135..2188894 (+) 2760 WP_014477161.1 PBP1A family penicillin-binding protein -
  NYR91_RS11080 (NYR91_11080) ypoC 2188970..2189464 (-) 495 WP_014477162.1 YpoC family protein -
  NYR91_RS11085 (NYR91_11085) nth 2189461..2190120 (-) 660 WP_009967580.1 endonuclease III -
  NYR91_RS11090 (NYR91_11090) dnaD 2190139..2190837 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=725014 NYR91_RS11070 WP_004399067.1 2185493..2186113(+) (recU) [Bacillus subtilis strain RO-NN-1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=725014 NYR91_RS11070 WP_004399067.1 2185493..2186113(+) (recU) [Bacillus subtilis strain RO-NN-1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCTACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1