Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NYR91_RS07825 Genome accession   NZ_CP103784
Coordinates   1491863..1492141 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain RO-NN-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486863..1497141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS07805 (NYR91_07805) panEB 1488051..1488962 (+) 912 WP_014476689.1 ketopantoate reductase family protein -
  NYR91_RS07810 (NYR91_07810) ampS 1488996..1490228 (-) 1233 WP_014476690.1 aminopeptidase -
  NYR91_RS07815 (NYR91_07815) ykpC 1490338..1490472 (-) 135 WP_003238865.1 protein YkpC -
  NYR91_RS07820 (NYR91_07820) mreBH 1490573..1491580 (-) 1008 WP_014476691.1 cell shape-determining protein MreBH -
  NYR91_RS07825 (NYR91_07825) abrB 1491863..1492141 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  NYR91_RS07830 (NYR91_07830) kinC 1492331..1493617 (+) 1287 WP_014476692.1 two-component sensor histidine kinase KinC -
  NYR91_RS07835 (NYR91_07835) ykqA 1493633..1494460 (+) 828 WP_014476693.1 gamma-glutamylcyclotransferase -
  NYR91_RS07840 (NYR91_07840) ktrC 1494523..1495188 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  NYR91_RS07845 (NYR91_07845) ade 1495344..1497077 (+) 1734 WP_014476694.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=725009 NYR91_RS07825 WP_003244728.1 1491863..1492141(+) (abrB) [Bacillus subtilis strain RO-NN-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=725009 NYR91_RS07825 WP_003244728.1 1491863..1492141(+) (abrB) [Bacillus subtilis strain RO-NN-1]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGTATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGTAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTGGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576