Detailed information NTG0725006

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PYZ88_RS18035
• Genome accession: NZ_CP119120
• Coordinates: 3706961..3707953 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GENOMIC22-004
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3701961..3712953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PYZ88_RS18015 (PYZ88_18000)	otnK	3702736..3703998 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
PYZ88_RS18020 (PYZ88_18005)	ygbL	3703995..3704633 (+)	639	WP_001278994.1	aldolase	-
PYZ88_RS18025 (PYZ88_18010)	ygbM	3704638..3705414 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
PYZ88_RS18030 (PYZ88_18015)	ygbN	3705503..3706867 (+)	1365	WP_000104456.1	GntP family transporter	-
PYZ88_RS18035 (PYZ88_18020)	rpoS	3706961..3707953 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PYZ88_RS18040 (PYZ88_18025)	nlpD	3708016..3709110 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PYZ88_RS18045 (PYZ88_18030)	pcm	3709295..3709921 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PYZ88_RS18050 (PYZ88_18035)	surE	3709915..3710676 (-)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
PYZ88_RS18055 (PYZ88_18040)	truD	3710657..3711706 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
PYZ88_RS18060 (PYZ88_18045)	ispF	3711703..3712182 (-)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PYZ88_RS18065 (PYZ88_18050)	ispD	3712182..3712892 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=725006 PYZ88_RS18035 WP_000081550.1 3706961..3707953(-) (rpoS) [Escherichia coli strain GENOMIC22-004]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=725006 PYZ88_RS18035 WP_000081550.1 3706961..3707953(-) (rpoS) [Escherichia coli strain GENOMIC22-004]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715