Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NYR91_RS05645 Genome accession   NZ_CP103784
Coordinates   1095413..1095991 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain RO-NN-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1090413..1100991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS20680 - 1090925..1091440 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  NYR91_RS20685 - 1091681..1092307 (-) 627 Protein_1045 protoglobin domain-containing protein -
  NYR91_RS05630 (NYR91_05630) comW 1092362..1093891 (-) 1530 WP_014476355.1 FAD-dependent oxidoreductase -
  NYR91_RS05635 (NYR91_05635) yhxC 1094003..1094860 (+) 858 WP_014476356.1 SDR family oxidoreductase -
  NYR91_RS05640 (NYR91_05640) yhzC 1094888..1095121 (-) 234 WP_014476357.1 IDEAL domain-containing protein -
  NYR91_RS05645 (NYR91_05645) comK 1095413..1095991 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  NYR91_RS05650 (NYR91_05650) yhxD 1096038..1096937 (-) 900 WP_014476358.1 SDR family oxidoreductase -
  NYR91_RS05655 (NYR91_05655) yhjA 1097155..1097424 (+) 270 WP_014476359.1 excalibur calcium-binding domain-containing protein -
  NYR91_RS05660 (NYR91_05660) yhjB 1097468..1098937 (-) 1470 WP_014476360.1 sodium:solute symporter -
  NYR91_RS05665 (NYR91_05665) yhjC 1098934..1099134 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NYR91_RS05670 (NYR91_05670) - 1099333..1099704 (-) 372 WP_014476361.1 hypothetical protein -
  NYR91_RS05675 (NYR91_05675) yhjE 1099856..1100479 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  NYR91_RS05680 (NYR91_05680) lepB 1100481..1100987 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=724995 NYR91_RS05645 WP_003245329.1 1095413..1095991(+) (comK) [Bacillus subtilis strain RO-NN-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=724995 NYR91_RS05645 WP_003245329.1 1095413..1095991(+) (comK) [Bacillus subtilis strain RO-NN-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTTAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGATAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1