Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYR91_RS01935 Genome accession   NZ_CP103784
Coordinates   363290..363739 (-) Length   149 a.a.
NCBI ID   WP_014475770.1    Uniprot ID   A0A0D1KPR3
Organism   Bacillus subtilis strain RO-NN-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 358290..368739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS01895 (NYR91_01895) - 358690..358884 (+) 195 Protein_331 hypothetical protein -
  NYR91_RS01900 (NYR91_01900) yckC 358907..359362 (+) 456 WP_014475763.1 RDD family protein -
  NYR91_RS01905 (NYR91_01905) yckD 359444..359776 (+) 333 WP_014475764.1 YckD family protein -
  NYR91_RS01910 (NYR91_01910) - 359904..360269 (+) 366 WP_050809189.1 MarR family winged helix-turn-helix transcriptional regulator -
  NYR91_RS01915 (NYR91_01915) - 360257..360574 (+) 318 WP_041519081.1 DUF3147 family protein -
  NYR91_RS01920 (NYR91_01920) - 360594..361322 (+) 729 WP_014475767.1 AAA family ATPase -
  NYR91_RS01925 (NYR91_01925) bglC 361395..362828 (+) 1434 WP_014475768.1 6-phospho-beta-glucosidase -
  NYR91_RS01930 (NYR91_01930) nin/comJ 362865..363263 (-) 399 WP_014475769.1 DNA-entry nuclease inhibitor Regulator
  NYR91_RS01935 (NYR91_01935) nucA/comI 363290..363739 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  NYR91_RS01940 (NYR91_01940) tlpC 363907..365628 (-) 1722 WP_014475771.1 methyl-accepting chemotaxis protein TlpC -
  NYR91_RS01945 (NYR91_01945) hxlB 365739..366296 (-) 558 WP_014475772.1 6-phospho-3-hexuloisomerase -
  NYR91_RS01950 (NYR91_01950) hxlA 366302..366934 (-) 633 WP_014475773.1 3-hexulose-6-phosphate synthase -
  NYR91_RS01955 (NYR91_01955) hxlR 367166..367528 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16440.39 Da        Isoelectric Point: 4.5282

>NTDB_id=724984 NYR91_RS01935 WP_014475770.1 363290..363739(-) (nucA/comI) [Bacillus subtilis strain RO-NN-1]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=724984 NYR91_RS01935 WP_014475770.1 363290..363739(-) (nucA/comI) [Bacillus subtilis strain RO-NN-1]
GTGAACATCACGACGGACATCATAAAAACAATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KPR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

98.658

100

0.987