Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PYZ88_RS08740 Genome accession   NZ_CP119120
Coordinates   1801159..1801788 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain GENOMIC22-004     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1796159..1806788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYZ88_RS08720 (PYZ88_08720) ycbZ 1796548..1798308 (-) 1761 WP_000156526.1 Lon protease family protein -
  PYZ88_RS08725 (PYZ88_08725) matP 1798494..1798946 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PYZ88_RS08730 (PYZ88_08730) ompA 1799022..1800074 (-) 1053 WP_001361736.1 porin OmpA -
  PYZ88_RS08735 (PYZ88_08735) sulA 1800431..1800940 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PYZ88_RS08740 (PYZ88_08740) sxy/tfoX 1801159..1801788 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PYZ88_RS08745 (PYZ88_08745) yccS 1801751..1803913 (-) 2163 WP_000875023.1 YccS family putative transporter -
  PYZ88_RS08750 (PYZ88_08750) yccF 1803923..1804369 (-) 447 WP_001261235.1 YccF domain-containing protein -
  PYZ88_RS08755 (PYZ88_08755) helD 1804492..1806546 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=724980 PYZ88_RS08740 WP_000839153.1 1801159..1801788(+) (sxy/tfoX) [Escherichia coli strain GENOMIC22-004]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=724980 PYZ88_RS08740 WP_000839153.1 1801159..1801788(+) (sxy/tfoX) [Escherichia coli strain GENOMIC22-004]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1