Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NYR92_RS19170 Genome accession   NZ_CP103783
Coordinates   3643758..3644447 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3638758..3649447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR92_RS19135 (NYR92_19135) flgN 3638938..3639420 (-) 483 WP_003227999.1 flagellar protein FlgN -
  NYR92_RS19140 (NYR92_19140) flgM 3639436..3639702 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYR92_RS19145 (NYR92_19145) yvyF 3639783..3640202 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NYR92_RS19150 (NYR92_19150) comFC 3640276..3640998 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  NYR92_RS19155 (NYR92_19155) comFB 3640962..3641258 (-) 297 WP_003227989.1 late competence protein ComFB -
  NYR92_RS19160 (NYR92_19160) comFA 3641318..3642709 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  NYR92_RS19165 (NYR92_19165) fakBA 3642815..3643660 (-) 846 WP_003244125.1 DegV family protein -
  NYR92_RS19170 (NYR92_19170) degU 3643758..3644447 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYR92_RS19175 (NYR92_19175) degS 3644530..3645687 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NYR92_RS19180 (NYR92_19180) yvyE 3645904..3646557 (+) 654 WP_003227979.1 YigZ family protein -
  NYR92_RS19185 (NYR92_19185) tagV 3646557..3647732 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NYR92_RS19190 (NYR92_19190) tagO 3647805..3648881 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=724967 NYR92_RS19170 WP_003219701.1 3643758..3644447(-) (degU) [Bacillus subtilis subsp. subtilis str. 168]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=724967 NYR92_RS19170 WP_003219701.1 3643758..3644447(-) (degU) [Bacillus subtilis subsp. subtilis str. 168]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1