Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYR92_RS12175 Genome accession   NZ_CP103783
Coordinates   2340261..2340881 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335261..2345881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR92_RS12135 (NYR92_12135) ptsA 2336392..2336898 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  NYR92_RS12140 (NYR92_12140) ypqA 2337036..2337455 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  NYR92_RS12145 (NYR92_12145) sppG 2337476..2337853 (-) 378 WP_004398696.1 YppG family protein -
  NYR92_RS12150 (NYR92_12150) yppF 2338041..2338229 (+) 189 WP_003230690.1 YppF family protein -
  NYR92_RS12155 (NYR92_12155) yppE 2338268..2338639 (-) 372 WP_003246080.1 YppE family protein -
  NYR92_RS12160 (NYR92_12160) yppD 2338685..2338930 (-) 246 WP_004398488.1 YppD family protein -
  NYR92_RS12165 (NYR92_12165) sspM 2339129..2339233 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NYR92_RS12170 (NYR92_12170) yppC 2339258..2340220 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  NYR92_RS12175 (NYR92_12175) recU 2340261..2340881 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  NYR92_RS12180 (NYR92_12180) ponA 2340903..2343647 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  NYR92_RS12185 (NYR92_12185) ypoC 2343723..2344217 (-) 495 WP_009967579.1 YpoC family protein -
  NYR92_RS12190 (NYR92_12190) nth 2344214..2344873 (-) 660 WP_009967580.1 endonuclease III -
  NYR92_RS12195 (NYR92_12195) dnaD 2344892..2345590 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=724933 NYR92_RS12175 WP_004399067.1 2340261..2340881(+) (recU) [Bacillus subtilis subsp. subtilis str. 168]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=724933 NYR92_RS12175 WP_004399067.1 2340261..2340881(+) (recU) [Bacillus subtilis subsp. subtilis str. 168]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1