Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   M52SOB_RS01025 Genome accession   NZ_AP019373
Coordinates   185946..186911 (-) Length   321 a.a.
NCBI ID   WP_131110030.1    Uniprot ID   -
Organism   Sulfuricystis thermophila strain M52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 180946..191911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M52SOB_RS01010 - 181342..182217 (-) 876 WP_131110025.1 permease-like cell division protein FtsX -
  M52SOB_RS01015 - 182223..184283 (-) 2061 WP_172601713.1 PAS domain-containing methyl-accepting chemotaxis protein -
  M52SOB_RS01020 - 184339..185949 (-) 1611 WP_131110028.1 NAD(P)/FAD-dependent oxidoreductase -
  M52SOB_RS01025 pilA 185946..186911 (-) 966 WP_131110030.1 signal recognition particle-docking protein FtsY Machinery gene
  M52SOB_RS01030 - 186985..188349 (+) 1365 WP_131110032.1 pitrilysin family protein -
  M52SOB_RS01035 - 188361..189647 (+) 1287 WP_131110034.1 pitrilysin family protein -
  M52SOB_RS01040 - 189932..190117 (+) 186 WP_131110036.1 DUF2283 domain-containing protein -
  M52SOB_RS01045 - 190213..190773 (-) 561 WP_172601714.1 FlgO family outer membrane protein -
  M52SOB_RS01050 - 190770..191441 (-) 672 WP_131110037.1 hypothetical protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 34435.10 Da        Isoelectric Point: 9.0593

>NTDB_id=72492 M52SOB_RS01025 WP_131110030.1 185946..186911(-) (pilA) [Sulfuricystis thermophila strain M52]
MFGFLKKDKPVDRAPDAAKPSWSERLKAGLAKTRAALTTPLSELFSRAKIDDELLEELEATLLMADCGVEATQWLLDQLK
AKVKKEKLEAPAQLRAALIDLMTELLKPLEAPLEVGAHKPFIIMIAGVNGAGKTTSIGKLAKQFQKEGRSVLLAAGDTFR
AAAREQLAEWGRRNDVTVVSQESGDPAAVVFDAISAARARGVDIVMADTAGRLPTQLHLMEEIAKVRRVIQKAEPSGPHE
VLLVLDANIGQNAIAQVKAFDKAIHVTGLIVTKLDGTAKGGVLAAIARQCPKPVRFIGVGEGIDDLQPFKARAFVEALFG
A

Nucleotide


Download         Length: 966 bp        

>NTDB_id=72492 M52SOB_RS01025 WP_131110030.1 185946..186911(-) (pilA) [Sulfuricystis thermophila strain M52]
ATGTTTGGTTTCCTGAAGAAAGACAAGCCCGTCGATCGAGCGCCTGACGCCGCCAAGCCTTCCTGGAGCGAGCGCCTCAA
AGCCGGCCTGGCGAAGACGCGCGCCGCGCTCACCACCCCACTTTCCGAACTCTTTTCGCGCGCGAAGATCGACGACGAAC
TGCTCGAAGAGCTCGAAGCGACGCTCTTGATGGCCGATTGCGGCGTCGAGGCGACGCAATGGCTGCTCGATCAGCTCAAG
GCGAAGGTCAAGAAAGAAAAGCTCGAAGCGCCGGCCCAGTTGCGCGCGGCGCTCATCGACCTGATGACGGAACTCCTCAA
GCCGCTGGAAGCGCCGCTCGAAGTCGGCGCGCACAAGCCGTTCATCATCATGATCGCCGGGGTCAATGGCGCCGGCAAGA
CCACCTCGATCGGCAAGCTCGCCAAGCAGTTCCAGAAGGAGGGCCGGAGCGTGCTGCTTGCCGCCGGCGACACTTTCCGC
GCCGCGGCGCGCGAGCAGCTCGCCGAATGGGGACGCAGGAACGACGTCACCGTAGTCAGCCAGGAGAGTGGTGATCCGGC
CGCCGTCGTGTTCGACGCGATTTCCGCCGCGCGCGCCCGCGGGGTGGACATCGTGATGGCCGATACTGCGGGCCGCCTGC
CCACACAACTGCATCTCATGGAGGAAATCGCCAAGGTGCGCCGCGTGATCCAGAAGGCGGAGCCCAGCGGGCCGCACGAG
GTGCTCTTGGTGCTCGACGCCAACATCGGCCAGAATGCGATTGCCCAGGTCAAAGCCTTCGACAAGGCGATCCATGTCAC
GGGGCTGATCGTCACCAAGCTCGATGGCACCGCGAAGGGCGGCGTGCTCGCGGCGATTGCGCGCCAGTGCCCGAAGCCGG
TGCGCTTCATCGGCGTCGGCGAAGGCATCGACGACTTGCAGCCGTTCAAGGCGCGCGCGTTCGTCGAGGCATTGTTCGGC
GCGTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(120-319)

SRP54-type protein, helical bundle domain (SRP54_N)

(40-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

63.576

94.081

0.598

Multiple sequence alignment