Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NYR92_RS02165 Genome accession   NZ_CP103783
Coordinates   428309..429457 (+) Length   382 a.a.
NCBI ID   WP_003246686.1    Uniprot ID   A0AAE2V9H5
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 423309..434457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR92_RS02145 (NYR92_02145) yclH 423686..424366 (-) 681 WP_003234507.1 ABC transporter ATP-binding protein -
  NYR92_RS02150 (NYR92_02150) yclI 424382..425842 (-) 1461 WP_003234506.1 ABC transporter permease -
  NYR92_RS02155 (NYR92_02155) yclJ 426055..426738 (+) 684 WP_003246532.1 two-component system response regulator YclJ -
  NYR92_RS02160 (NYR92_02160) yclK 426725..428146 (+) 1422 WP_009969263.1 two-component system sensor histidine kinase YclK -
  NYR92_RS02165 (NYR92_02165) rapC 428309..429457 (+) 1149 WP_003246686.1 response regulator aspartate phosphatase RapC Regulator
  NYR92_RS02170 (NYR92_02170) phrC 429441..429563 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  NYR92_RS02175 (NYR92_02175) yczM 429663..429752 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  NYR92_RS02180 (NYR92_02180) yczN 429834..429947 (-) 114 WP_003234495.1 YjcZ family sporulation protein -
  NYR92_RS02185 (NYR92_02185) thrD 430101..431465 (-) 1365 WP_009966541.1 aspartate kinase -
  NYR92_RS02190 (NYR92_02190) ceuB 431850..432800 (+) 951 WP_003234491.1 petrobactin ABC transporter permease YclN Machinery gene
  NYR92_RS02195 (NYR92_02195) yclO 432793..433740 (+) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45634.68 Da        Isoelectric Point: 4.9618

>NTDB_id=724900 NYR92_RS02165 WP_003246686.1 428309..429457(+) (rapC) [Bacillus subtilis subsp. subtilis str. 168]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYLDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=724900 NYR92_RS02165 WP_003246686.1 428309..429457(+) (rapC) [Bacillus subtilis subsp. subtilis str. 168]
ATGAAGAGTGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTCTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAGTGCCATTT
CGTCTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAACATGGCCC
AAGCAGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTCGGGTTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCTGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  rapF Bacillus subtilis subsp. subtilis str. 168

57.368

99.476

0.571