Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JUD77_RS02660 Genome accession   NZ_AP024414
Coordinates   540896..541399 (-) Length   167 a.a.
NCBI ID   WP_005662536.1    Uniprot ID   -
Organism   Haemophilus influenzae strain TA8730     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 535896..546399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JUD77_RS02635 (TA8730_05000) - 536030..537082 (+) 1053 WP_071162906.1 extracellular solute-binding protein -
  JUD77_RS02640 (TA8730_05010) hslU 537152..538486 (-) 1335 WP_071162905.1 HslU--HslV peptidase ATPase subunit -
  JUD77_RS02645 (TA8730_05020) hslV 538497..539024 (-) 528 WP_005652018.1 ATP-dependent protease subunit HslV -
  JUD77_RS02650 (TA8730_05030) aphA 539244..539951 (+) 708 WP_005649426.1 acid phosphatase AphA -
  JUD77_RS02655 - 539998..540794 (-) 797 Protein_505 IS3 family transposase -
  JUD77_RS02660 (TA8730_05050) luxS 540896..541399 (-) 504 WP_005662536.1 S-ribosylhomocysteine lyase Regulator
  JUD77_RS02665 (TA8730_05060) - 541584..542057 (-) 474 WP_071162904.1 YqaA family protein -
  JUD77_RS02670 (TA8730_05070) - 542057..542659 (-) 603 WP_005652027.1 beta-phosphoglucomutase family hydrolase -
  JUD77_RS02675 (TA8730_05080) - 542775..543152 (+) 378 WP_103707991.1 PRD domain-containing protein -
  JUD77_RS02680 (TA8730_05090) rsmG 543292..543903 (+) 612 WP_071162903.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  JUD77_RS02685 (TA8730_05100) - 544029..544403 (+) 375 WP_005659757.1 ATP synthase subunit I -
  JUD77_RS02690 (TA8730_05110) atpB 544440..545228 (+) 789 WP_071162902.1 F0F1 ATP synthase subunit A -
  JUD77_RS02695 (TA8730_05120) atpE 545284..545538 (+) 255 WP_005652035.1 F0F1 ATP synthase subunit C -
  JUD77_RS02700 (TA8730_05130) atpF 545588..546058 (+) 471 WP_005629246.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18571.22 Da        Isoelectric Point: 4.9925

>NTDB_id=72490 JUD77_RS02660 WP_005662536.1 540896..541399(-) (luxS) [Haemophilus influenzae strain TA8730]
MPLLDSFKVDHTKMNAPAVRIAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=72490 JUD77_RS02660 WP_005662536.1 540896..541399(-) (luxS) [Haemophilus influenzae strain TA8730]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGCGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTGTTTGCTGGATTTATGCGCGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTGTCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737

Multiple sequence alignment