Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   NYR48_RS18080 Genome accession   NZ_CP103782
Coordinates   3658207..3659352 (+) Length   381 a.a.
NCBI ID   WP_259424699.1    Uniprot ID   -
Organism   Bacillus velezensis strain DA4     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3653207..3664352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS18060 - 3653682..3654398 (-) 717 WP_259424698.1 Crp/Fnr family transcriptional regulator -
  NYR48_RS18065 narK 3654496..3655686 (-) 1191 WP_007407632.1 nitrate transporter NarK -
  NYR48_RS18070 argS 3655820..3657490 (-) 1671 WP_007407633.1 arginine--tRNA ligase -
  NYR48_RS18075 - 3657487..3657915 (-) 429 WP_003151069.1 DUF1934 domain-containing protein -
  NYR48_RS18080 rapF 3658207..3659352 (+) 1146 WP_259424699.1 tetratricopeptide repeat protein Regulator
  NYR48_RS18085 - 3659336..3659455 (+) 120 WP_003151066.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  NYR48_RS18090 - 3659653..3659856 (+) 204 WP_259424700.1 helix-turn-helix transcriptional regulator -
  NYR48_RS18095 - 3659870..3660073 (+) 204 WP_007407641.1 hypothetical protein -
  NYR48_RS18100 - 3660108..3660293 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  NYR48_RS18105 - 3660480..3660761 (+) 282 WP_007407643.1 hypothetical protein -
  NYR48_RS18110 - 3660805..3661317 (+) 513 WP_023357177.1 stage II sporulation protein M -
  NYR48_RS18115 - 3661908..3662126 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  NYR48_RS18120 speB 3662294..3663166 (-) 873 WP_007614448.1 agmatinase -
  NYR48_RS18125 speE 3663225..3664055 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45286.37 Da        Isoelectric Point: 4.9264

>NTDB_id=724887 NYR48_RS18080 WP_259424699.1 3658207..3659352(+) (rapF) [Bacillus velezensis strain DA4]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLITQIHYKLERYDKALEYHNKGVIRSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=724887 NYR48_RS18080 WP_259424699.1 3658207..3659352(+) (rapF) [Bacillus velezensis strain DA4]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTGTCGGCTATAAAATTTTTCAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGACTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCGATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACACTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTCTGCCCCAAGCATATTTTTT
AATTACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAATAAAGGAGTTATCCGTTCCGAAG
AGTCAGCAGATTCAGTTTATTTACACGAATTCGAATTTTTAAAATCCTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAACGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTGGATGCAGCTAAATATTA
TCACAAACTTGAAGATTACAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

74.541

100

0.745
  rapC Bacillus subtilis subsp. subtilis str. 168

52.895

99.738

0.528