Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NYR48_RS13330 Genome accession   NZ_CP103782
Coordinates   2723458..2724210 (-) Length   250 a.a.
NCBI ID   WP_259424338.1    Uniprot ID   -
Organism   Bacillus velezensis strain DA4     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2718458..2729210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS13305 mreC 2718894..2719757 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  NYR48_RS13310 mreB 2719788..2720801 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  NYR48_RS13315 radC 2720893..2721588 (-) 696 WP_259424335.1 DNA repair protein RadC -
  NYR48_RS13320 - 2721620..2722189 (-) 570 WP_259424336.1 nucleoside triphosphate pyrophosphatase -
  NYR48_RS13325 - 2722330..2723331 (-) 1002 WP_259424337.1 SPOR domain-containing protein -
  NYR48_RS13330 comC 2723458..2724210 (-) 753 WP_259424338.1 A24 family peptidase Machinery gene
  NYR48_RS13335 - 2724350..2725642 (-) 1293 WP_259424339.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NYR48_RS13340 - 2725701..2728343 (-) 2643 WP_259424340.1 valine--tRNA ligase -
  NYR48_RS13345 - 2728796..2728987 (+) 192 WP_259424341.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27063.76 Da        Isoelectric Point: 9.5938

>NTDB_id=724869 NYR48_RS13330 WP_259424338.1 2723458..2724210(-) (comC) [Bacillus velezensis strain DA4]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLIIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLGSWYAGVAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=724869 NYR48_RS13330 WP_259424338.1 2723458..2724210(-) (comC) [Bacillus velezensis strain DA4]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGCTTATTTACGGCTGCCGGTATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
CATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGTTGGGTTCATGGTATGCAGGGGTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCTCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588