Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NYR48_RS12525 Genome accession   NZ_CP103782
Coordinates   2574104..2574871 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain DA4     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2569104..2579871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS12505 - 2569306..2570118 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  NYR48_RS12510 ccpN 2570144..2570782 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  NYR48_RS12515 glyS 2570883..2572922 (-) 2040 WP_259424278.1 glycine--tRNA ligase subunit beta -
  NYR48_RS12520 glyQ 2572915..2573802 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  NYR48_RS12525 recO 2574104..2574871 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  NYR48_RS12530 - 2574908..2575051 (-) 144 WP_007408286.1 YqzL family protein -
  NYR48_RS12535 era 2575207..2576112 (-) 906 WP_007408285.1 GTPase Era -
  NYR48_RS12540 - 2576093..2576503 (-) 411 WP_259424279.1 cytidine deaminase -
  NYR48_RS12545 - 2576627..2577001 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  NYR48_RS12550 ybeY 2576982..2577455 (-) 474 WP_259424280.1 rRNA maturation RNase YbeY -
  NYR48_RS12555 - 2577456..2579588 (-) 2133 WP_259424281.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=724862 NYR48_RS12525 WP_007408287.1 2574104..2574871(-) (recO) [Bacillus velezensis strain DA4]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=724862 NYR48_RS12525 WP_007408287.1 2574104..2574871(-) (recO) [Bacillus velezensis strain DA4]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTTGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89