Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NYR48_RS12020 Genome accession   NZ_CP103782
Coordinates   2488828..2489628 (-) Length   266 a.a.
NCBI ID   WP_259424251.1    Uniprot ID   -
Organism   Bacillus velezensis strain DA4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2483828..2494628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS11990 - 2484367..2484999 (+) 633 WP_007408365.1 helix-turn-helix domain-containing protein -
  NYR48_RS11995 - 2485296..2485433 (+) 138 WP_014470646.1 hypothetical protein -
  NYR48_RS12000 - 2485527..2486645 (+) 1119 WP_015240192.1 NADH-dependent flavin oxidoreductase -
  NYR48_RS12005 - 2486772..2486984 (+) 213 WP_007408362.1 spore germination protein -
  NYR48_RS12010 - 2487109..2487321 (+) 213 WP_007612499.1 spore germination protein -
  NYR48_RS12015 alr 2487498..2488679 (+) 1182 WP_259424250.1 alanine racemase -
  NYR48_RS12020 spo0A 2488828..2489628 (-) 801 WP_259424251.1 sporulation transcription factor Spo0A Regulator
  NYR48_RS12025 spoIVB 2489909..2491189 (-) 1281 WP_033574141.1 SpoIVB peptidase -
  NYR48_RS12030 recN 2491352..2493082 (-) 1731 WP_007408359.1 DNA repair protein RecN Machinery gene
  NYR48_RS12035 ahrC 2493114..2493563 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  NYR48_RS12040 - 2493660..2494505 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29558.04 Da        Isoelectric Point: 6.3903

>NTDB_id=724853 NYR48_RS12020 WP_259424251.1 2488828..2489628(-) (spo0A) [Bacillus velezensis strain DA4]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELGKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=724853 NYR48_RS12020 WP_259424251.1 2488828..2489628(-) (spo0A) [Bacillus velezensis strain DA4]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCAGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGGGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAGCCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97