Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYR48_RS10955 Genome accession   NZ_CP103782
Coordinates   2243051..2243659 (+) Length   202 a.a.
NCBI ID   WP_259425631.1    Uniprot ID   -
Organism   Bacillus velezensis strain DA4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2238051..2248659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS10915 - 2239071..2239577 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  NYR48_RS10920 - 2239716..2240129 (+) 414 WP_225046284.1 Hsp20/alpha crystallin family protein -
  NYR48_RS10925 - 2240159..2240626 (-) 468 WP_259424181.1 YppG family protein -
  NYR48_RS10930 - 2240813..2240995 (+) 183 WP_003153532.1 YppF family protein -
  NYR48_RS10935 - 2241034..2241402 (-) 369 WP_007409492.1 YppE family protein -
  NYR48_RS10940 - 2241448..2241693 (-) 246 WP_259424182.1 DUF5446 family protein -
  NYR48_RS10945 sspM 2241899..2242003 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  NYR48_RS10950 - 2242047..2243009 (-) 963 WP_259424183.1 DUF2515 domain-containing protein -
  NYR48_RS10955 recU 2243051..2243659 (+) 609 WP_259425631.1 Holliday junction resolvase RecU Machinery gene
  NYR48_RS10960 - 2243698..2246478 (+) 2781 WP_259424184.1 PBP1A family penicillin-binding protein -
  NYR48_RS10965 - 2246556..2247047 (-) 492 WP_259424185.1 YpoC family protein -
  NYR48_RS10970 nth 2247044..2247703 (-) 660 WP_047935888.1 endonuclease III -
  NYR48_RS10975 dnaD 2247722..2248420 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23690.78 Da        Isoelectric Point: 9.5849

>NTDB_id=724852 NYR48_RS10955 WP_259425631.1 2243051..2243659(+) (recU) [Bacillus velezensis strain DA4]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRRDELEDASFPIPLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=724852 NYR48_RS10955 WP_259425631.1 2243051..2243659(+) (recU) [Bacillus velezensis strain DA4]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACCGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCACGATCACCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAGAGACGAATTAGAAGATGCTTCCTTTCCGATTCCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886