Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYR48_RS09115 Genome accession   NZ_CP103782
Coordinates   1853542..1853976 (+) Length   144 a.a.
NCBI ID   WP_003154085.1    Uniprot ID   -
Organism   Bacillus velezensis strain DA4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1848542..1858976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS09110 - 1852042..1853253 (-) 1212 WP_259425535.1 cytochrome P450 -
  NYR48_RS09115 nucA/comI 1853542..1853976 (+) 435 WP_003154085.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYR48_RS09120 - 1854036..1854791 (+) 756 WP_003154084.1 YoaK family protein -
  NYR48_RS09125 - 1854825..1855187 (-) 363 WP_007410383.1 hypothetical protein -
  NYR48_RS09130 - 1855381..1856709 (-) 1329 WP_007410382.1 S8 family peptidase -
  NYR48_RS09135 - 1856888..1857121 (+) 234 WP_259425536.1 hypothetical protein -
  NYR48_RS09140 - 1857377..1858084 (+) 708 WP_259425537.1 poly-gamma-glutamate hydrolase family protein -
  NYR48_RS09145 - 1858144..1858596 (+) 453 WP_259425538.1 OsmC family protein -
  NYR48_RS09150 - 1858610..1858963 (-) 354 WP_007410379.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15509.42 Da        Isoelectric Point: 6.8606

>NTDB_id=724851 NYR48_RS09115 WP_003154085.1 1853542..1853976(+) (nucA/comI) [Bacillus velezensis strain DA4]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAAHAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=724851 NYR48_RS09115 WP_003154085.1 1853542..1853976(+) (nucA/comI) [Bacillus velezensis strain DA4]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCATGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCTTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGTTATT
CCGACGGAACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486