Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NYR48_RS07710 Genome accession   NZ_CP103782
Coordinates   1464415..1464699 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain DA4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459415..1469699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS07690 - 1460658..1461566 (+) 909 WP_259425438.1 ketopantoate reductase family protein -
  NYR48_RS07695 - 1461598..1462830 (-) 1233 WP_007409644.1 aminopeptidase -
  NYR48_RS07700 - 1462931..1463065 (-) 135 WP_003154559.1 protein YkpC -
  NYR48_RS07705 mreBH 1463137..1464144 (-) 1008 WP_259425439.1 cell shape-determining protein MreBH -
  NYR48_RS07710 abrB 1464415..1464699 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NYR48_RS07715 - 1464872..1466176 (+) 1305 WP_259425440.1 ATP-binding protein -
  NYR48_RS07720 - 1466178..1467005 (+) 828 WP_259425441.1 gamma-glutamylcyclotransferase -
  NYR48_RS07725 ktrC 1467046..1467711 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  NYR48_RS07730 ade 1467860..1469593 (+) 1734 WP_043021212.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=724846 NYR48_RS07710 WP_024085249.1 1464415..1464699(+) (abrB) [Bacillus velezensis strain DA4]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=724846 NYR48_RS07710 WP_024085249.1 1464415..1464699(+) (abrB) [Bacillus velezensis strain DA4]
ATGAAATCGATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543