Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NYR48_RS07600 Genome accession   NZ_CP103782
Coordinates   1443916..1444512 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus velezensis strain DA4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1438916..1449512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS07570 - 1439128..1439583 (+) 456 WP_259425433.1 flavodoxin -
  NYR48_RS07575 dapD 1439665..1440375 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NYR48_RS07580 - 1440446..1441570 (+) 1125 WP_017417680.1 N-acetyldiaminopimelate deacetylase -
  NYR48_RS07585 - 1441631..1441876 (+) 246 WP_003154596.1 YkuS family protein -
  NYR48_RS07590 - 1441910..1442716 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  NYR48_RS07595 - 1443005..1443463 (+) 459 WP_259425434.1 TlpA disulfide reductase family protein -
  NYR48_RS07600 rok 1443916..1444512 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  NYR48_RS07605 - 1444536..1445528 (-) 993 WP_259425435.1 sporulation protein -
  NYR48_RS07610 - 1445674..1446276 (+) 603 WP_259425436.1 molybdenum cofactor guanylyltransferase -
  NYR48_RS07615 - 1446328..1447347 (+) 1020 WP_039062999.1 molybdopterin-synthase adenylyltransferase MoeB -
  NYR48_RS07620 glp 1447365..1448657 (+) 1293 WP_259425437.1 gephyrin-like molybdotransferase Glp -
  NYR48_RS07625 mobB 1448618..1449139 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=724845 NYR48_RS07600 WP_012117447.1 1443916..1444512(+) (rok) [Bacillus velezensis strain DA4]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=724845 NYR48_RS07600 WP_012117447.1 1443916..1444512(+) (rok) [Bacillus velezensis strain DA4]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAGAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843