Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NYR48_RS07500 Genome accession   NZ_CP103782
Coordinates   1428074..1428538 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain DA4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1423074..1433538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS07480 - 1423554..1425374 (+) 1821 WP_015417363.1 PAS domain-containing protein -
  NYR48_RS07485 - 1425350..1426569 (-) 1220 Protein_1413 aminotransferase A -
  NYR48_RS07490 - 1426770..1426931 (-) 162 WP_007409608.1 hypothetical protein -
  NYR48_RS07495 cheV 1427120..1428031 (+) 912 WP_039251615.1 chemotaxis protein CheV -
  NYR48_RS07500 kre 1428074..1428538 (-) 465 WP_003154622.1 YkyB family protein Regulator
  NYR48_RS07505 - 1428661..1429953 (-) 1293 WP_259425429.1 MFS transporter -
  NYR48_RS07510 - 1430029..1430523 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  NYR48_RS07515 - 1430598..1431461 (-) 864 WP_259425430.1 metallophosphoesterase -
  NYR48_RS07520 fadH 1431606..1432370 (+) 765 WP_015417368.1 2,4-dienoyl-CoA reductase -
  NYR48_RS07525 - 1432533..1433006 (+) 474 WP_259425620.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=724844 NYR48_RS07500 WP_003154622.1 1428074..1428538(-) (kre) [Bacillus velezensis strain DA4]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=724844 NYR48_RS07500 WP_003154622.1 1428074..1428538(-) (kre) [Bacillus velezensis strain DA4]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929