Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NYR48_RS05465 Genome accession   NZ_CP103782
Coordinates   1064964..1065542 (+) Length   192 a.a.
NCBI ID   WP_012117234.1    Uniprot ID   -
Organism   Bacillus velezensis strain DA4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1059964..1070542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS19845 - 1060464..1060979 (-) 516 WP_375167588.1 methyl-accepting chemotaxis protein -
  NYR48_RS19850 - 1061223..1061882 (-) 660 Protein_1007 protoglobin domain-containing protein -
  NYR48_RS05450 - 1061879..1063402 (-) 1524 WP_259425247.1 FAD-dependent oxidoreductase -
  NYR48_RS05455 - 1063527..1064384 (+) 858 WP_015239527.1 SDR family oxidoreductase -
  NYR48_RS05460 - 1064415..1064648 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  NYR48_RS05465 comK 1064964..1065542 (+) 579 WP_012117234.1 competence protein ComK Regulator
  NYR48_RS05470 - 1065688..1066056 (+) 369 WP_169509724.1 iron chaperone -
  NYR48_RS05475 - 1066083..1066454 (+) 372 WP_174747701.1 iron chaperone -
  NYR48_RS05480 eis 1066501..1067712 (-) 1212 WP_259425248.1 enhanced intracellular survival protein Eis -
  NYR48_RS05485 - 1067869..1068579 (-) 711 WP_259425249.1 YrpD family protein -
  NYR48_RS05490 - 1068775..1069044 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  NYR48_RS05495 - 1069077..1069394 (-) 318 WP_003155166.1 YbjQ family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22301.55 Da        Isoelectric Point: 8.1419

>NTDB_id=724833 NYR48_RS05465 WP_012117234.1 1064964..1065542(+) (comK) [Bacillus velezensis strain DA4]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HVPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=724833 NYR48_RS05465 WP_012117234.1 1064964..1065542(+) (comK) [Bacillus velezensis strain DA4]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTACCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATGTCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828