Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   NYR48_RS04390 Genome accession   NZ_CP103782
Coordinates   868276..869067 (+) Length   263 a.a.
NCBI ID   WP_259425159.1    Uniprot ID   -
Organism   Bacillus velezensis strain DA4     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 863276..874067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS04365 - 865269..866153 (+) 885 WP_259425158.1 PhzF family phenazine biosynthesis isomerase -
  NYR48_RS04370 - 866230..866814 (+) 585 WP_007408549.1 nitroreductase -
  NYR48_RS04375 - 866855..867046 (-) 192 WP_003155508.1 YfhD family protein -
  NYR48_RS04380 - 867117..867227 (-) 111 WP_003155504.1 YfhE family protein -
  NYR48_RS04385 - 867285..868184 (-) 900 WP_110124595.1 TIGR01777 family oxidoreductase -
  NYR48_RS04390 recX 868276..869067 (+) 792 WP_259425159.1 recombination regulator RecX Regulator
  NYR48_RS04395 - 869074..869388 (+) 315 WP_007408553.1 YfhH family protein -
  NYR48_RS04400 - 869532..870725 (+) 1194 WP_259425608.1 MFS transporter -
  NYR48_RS04405 - 870765..871154 (-) 390 WP_259425160.1 YbfJ family protein -
  NYR48_RS04410 - 871117..872028 (-) 912 WP_015239429.1 serine protease -
  NYR48_RS04415 - 872174..872326 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  NYR48_RS04420 - 872450..872719 (+) 270 WP_003155492.1 YfhJ family protein -
  NYR48_RS04425 - 872852..873379 (+) 528 WP_015239430.1 SH3 domain-containing protein -
  NYR48_RS04430 - 873465..873800 (+) 336 WP_259425161.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30988.21 Da        Isoelectric Point: 6.0922

>NTDB_id=724828 NYR48_RS04390 WP_259425159.1 868276..869067(+) (recX) [Bacillus velezensis strain DA4]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQFLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=724828 NYR48_RS04390 WP_259425159.1 868276..869067(+) (recX) [Bacillus velezensis strain DA4]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCGGAGGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGATGTTATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCAGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTTCTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.848

100

0.798