Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYR48_RS01775 Genome accession   NZ_CP103782
Coordinates   330078..330515 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain DA4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 325078..335515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS01750 - 326097..327233 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  NYR48_RS01755 - 327248..327682 (+) 435 WP_063096155.1 RDD family protein -
  NYR48_RS01760 - 327755..328078 (+) 324 WP_259424952.1 YckD family protein -
  NYR48_RS01765 - 328182..329618 (+) 1437 WP_259424953.1 glycoside hydrolase family 1 protein -
  NYR48_RS01770 nin/comJ 329659..330057 (-) 399 WP_259424954.1 competence protein ComJ Regulator
  NYR48_RS01775 nucA/comI 330078..330515 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYR48_RS01780 hxlB 330874..331431 (-) 558 WP_259424955.1 6-phospho-3-hexuloisomerase -
  NYR48_RS01785 hxlA 331428..332063 (-) 636 WP_259424956.1 3-hexulose-6-phosphate synthase -
  NYR48_RS01790 - 332295..332657 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=724822 NYR48_RS01775 WP_003156588.1 330078..330515(-) (nucA/comI) [Bacillus velezensis strain DA4]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=724822 NYR48_RS01775 WP_003156588.1 330078..330515(-) (nucA/comI) [Bacillus velezensis strain DA4]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641