Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NYR47_RS21605 Genome accession   NZ_CP103777
Coordinates   4205029..4206072 (-) Length   347 a.a.
NCBI ID   WP_001013173.1    Uniprot ID   -
Organism   Bacillus toyonensis strain DC11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4200029..4211072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS21560 - 4200454..4200654 (-) 201 WP_000106086.1 YqzE family protein -
  NYR47_RS21565 - 4200693..4201190 (-) 498 WP_000836652.1 shikimate kinase -
  NYR47_RS21570 - 4201311..4201961 (-) 651 WP_098911397.1 2OG-Fe(II) oxygenase -
  NYR47_RS21575 comGG 4202136..4202507 (-) 372 WP_000743703.1 competence type IV pilus minor pilin ComGG -
  NYR47_RS21580 comGF 4202504..4202977 (-) 474 WP_259417790.1 competence type IV pilus minor pilin ComGF -
  NYR47_RS21585 - 4202947..4203249 (-) 303 WP_000829525.1 hypothetical protein -
  NYR47_RS21590 comGD 4203242..4203697 (-) 456 WP_000810404.1 competence type IV pilus minor pilin ComGD -
  NYR47_RS21595 comGC 4203694..4203993 (-) 300 WP_259416209.1 competence type IV pilus major pilin ComGC -
  NYR47_RS21600 comGB 4204005..4205042 (-) 1038 WP_310796240.1 competence type IV pilus assembly protein ComGB -
  NYR47_RS21605 comGA 4205029..4206072 (-) 1044 WP_001013173.1 competence type IV pilus ATPase ComGA Machinery gene
  NYR47_RS21610 - 4206277..4206972 (+) 696 WP_000434114.1 metalloregulator ArsR/SmtB family transcription factor -
  NYR47_RS21615 - 4207098..4207340 (+) 243 WP_000440717.1 DUF2626 domain-containing protein -
  NYR47_RS21620 - 4207448..4208842 (+) 1395 WP_001094345.1 L-cystine transporter -
  NYR47_RS21625 - 4208905..4209297 (-) 393 WP_259416211.1 hypothetical protein -
  NYR47_RS21630 - 4209385..4209600 (-) 216 WP_001008324.1 DUF3912 family protein -
  NYR47_RS21635 - 4209853..4210164 (+) 312 WP_001092833.1 hypothetical protein -
  NYR47_RS21640 - 4210200..4210688 (-) 489 WP_000764241.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39220.57 Da        Isoelectric Point: 8.5491

>NTDB_id=724798 NYR47_RS21605 WP_001013173.1 4205029..4206072(-) (comGA) [Bacillus toyonensis strain DC11]
MNGIEIFANTILKEACRVQASDLHIVPRQKDVAVQLRIGKDLITKQCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQIDGQEVYLRLSTLPTVYRESLVIRLHLQASVQPLSHLSLFPSTAEKLLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKRKTRRIVTLEDPVEKRKDDLLQIQINEKAGITYEAGLKAILRHDPDIILVGEIRDEETAKIAVRASLTGHLVMTTLH
TNDAKGAILRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSILCKSMRQVRQASVYELLDGYDLQQAIKEANGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=724798 NYR47_RS21605 WP_001013173.1 4205029..4206072(-) (comGA) [Bacillus toyonensis strain DC11]
ATGAATGGAATTGAAATTTTTGCGAATACAATTTTGAAAGAAGCGTGTAGGGTACAAGCATCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGCGGTTCAGCTACGTATAGGAAAAGATTTAATTACGAAACAATGTATTGAAAAGGAGTTTGGAG
AAAAACTTGTTTCGCACTTTAAATTTTTGGCATCCATGGATATAGGAGAGAGGCGGAAGCCACAAAATGGTTCATTGTAT
TTACAAATTGATGGACAAGAAGTGTATTTACGTCTTTCAACACTTCCGACTGTATATCGAGAAAGTCTCGTGATTCGCCT
TCATTTACAAGCATCTGTGCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACGGCGGAAAAACTCCTCTCTTTTTTAC
GTTATTCACATGGTCTACTCGTATTTACTGGACCGACTGGTTCTGGGAAGACAACGACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAGGAAAACACGTCGAATTGTAACACTTGAAGACCCAGTTGAAAAAAGAAAAGACGATTTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTACGCCATGATCCAGATATTATATTAGTTG
GTGAAATCCGAGATGAAGAAACAGCAAAAATAGCTGTAAGAGCAAGTTTAACTGGACATTTAGTAATGACGACCCTGCAT
ACGAATGATGCGAAAGGAGCGATACTCAGATTTATGGATTATGGCATAACGAGGCAAGAAATTGAACAATCTTTATTGGC
TGTAGCTGCACAGCGACTTGTTGAATTAAAGTGTCCATTTTGCAGAGGAAAGTGCTCAATTTTATGTAAATCAATGCGGC
AAGTAAGACAAGCAAGCGTTTACGAGTTGTTAGATGGATATGATTTGCAACAAGCGATTAAAGAAGCGAACGGAGAATGT
GTTACGTACAAACATGAAACATTAGAATCTTCGATACGAAAAGGGTATGCTTTAGGATTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.637

100

0.576