Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYR47_RS20385 Genome accession   NZ_CP103777
Coordinates   3995298..3995732 (-) Length   144 a.a.
NCBI ID   WP_000811503.1    Uniprot ID   -
Organism   Bacillus toyonensis strain DC11     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3990298..4000732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS20370 - 3991466..3992023 (+) 558 WP_000062081.1 PadR family transcriptional regulator -
  NYR47_RS20375 metE 3992547..3994835 (+) 2289 WP_259416147.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  NYR47_RS20380 - 3994873..3995262 (-) 390 WP_000424021.1 competence protein ComJ -
  NYR47_RS20385 nucA/comI 3995298..3995732 (-) 435 WP_000811503.1 DNA-entry nuclease Machinery gene
  NYR47_RS20390 - 3995971..3996720 (+) 750 WP_259416148.1 DUF3967 domain-containing protein -
  NYR47_RS20395 - 3996759..3998033 (-) 1275 WP_259416149.1 HAMP domain-containing sensor histidine kinase -
  NYR47_RS20400 - 3998345..3998545 (+) 201 WP_000929282.1 hypothetical protein -
  NYR47_RS20405 - 3998664..3999827 (+) 1164 WP_000434561.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16010.38 Da        Isoelectric Point: 8.4331

>NTDB_id=724795 NYR47_RS20385 WP_000811503.1 3995298..3995732(-) (nucA/comI) [Bacillus toyonensis strain DC11]
MKQLKGIIISIIAILSIVVAVYEVLVPEETSIKKTNAYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAGDRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=724795 NYR47_RS20385 WP_000811503.1 3995298..3995732(-) (nucA/comI) [Bacillus toyonensis strain DC11]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTGTAGTAGCGGTGTATGAAGTACTTGTTCC
AGAGGAAACAAGTATCAAAAAAACGAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGAGCGATATCCAGAGACAGGGA
AACATATTACGGATGCTATAAAAGAAGGACATTCAGAAGTTTGTACAATTGATCGCGGTGGTGCTGGAGATAGAAGGAAA
TTATCGTTAGCTCCATATCCATCAAAAAAAGGCTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGGGCGCATATTGAATATATAAGTCCAGCGGATAATCGCGGAGCAGGTTCTTGGGTAGGAAATAAGTTAGATAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(50-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.171

77.083

0.549