Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NYR47_RS20340 Genome accession   NZ_CP103777
Coordinates   3985992..3986450 (+) Length   152 a.a.
NCBI ID   WP_259416144.1    Uniprot ID   -
Organism   Bacillus toyonensis strain DC11     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3980992..3991450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS20325 - 3981667..3981891 (+) 225 WP_000283737.1 hypothetical protein -
  NYR47_RS20330 - 3982060..3984168 (-) 2109 WP_259416142.1 polyphosphate kinase -
  NYR47_RS20335 - 3984286..3985815 (-) 1530 WP_259416143.1 Ppx/GppA family phosphatase -
  NYR47_RS20340 kre 3985992..3986450 (+) 459 WP_259416144.1 YkyB family protein Regulator
  NYR47_RS20345 - 3986482..3987144 (-) 663 WP_144467035.1 YkyA family protein -
  NYR47_RS20350 - 3987790..3988443 (-) 654 WP_259416145.1 diguanylate cyclase domain-containing protein -
  NYR47_RS20355 - 3988608..3988841 (+) 234 WP_000939445.1 SPP1 phage holin family protein -
  NYR47_RS20360 - 3988873..3989373 (-) 501 WP_097954288.1 hypothetical protein -
  NYR47_RS20365 - 3989808..3991349 (+) 1542 WP_259416146.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17772.42 Da        Isoelectric Point: 10.6181

>NTDB_id=724794 NYR47_RS20340 WP_259416144.1 3985992..3986450(+) (kre) [Bacillus toyonensis strain DC11]
MKPSQPQSQLQNQHPINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYYFHIPPTKEDFRNLPHLGHLESSYRNPKTTLSLTVSKKTLQDYIGPEALKQEKKLSEPAPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=724794 NYR47_RS20340 WP_259416144.1 3985992..3986450(+) (kre) [Bacillus toyonensis strain DC11]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATCCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCCAAAGCTGCAACTAACCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAGCGTTTAATCGCCGAAA
AAAAAGCAATTAAAGAAGGATTACATTTCTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGGTTA
GGCGATTATTATTTCCACATCCCTCCTACGAAAGAAGATTTTCGAAACCTACCACATCTTGGTCATCTTGAATCCTCCTA
CCGAAACCCGAAAACAACCTTGTCTTTAACAGTTTCCAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCACTGAAAC
AAGAAAAAAAATTAAGTGAACCTGCTCCATGGTATAGCCGCACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

65.487

74.342

0.487