Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NYR47_RS19235 Genome accession   NZ_CP103777
Coordinates   3764358..3765596 (-) Length   412 a.a.
NCBI ID   WP_259416102.1    Uniprot ID   -
Organism   Bacillus toyonensis strain DC11     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3759358..3770596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS19215 rny 3760147..3761709 (-) 1563 WP_000204910.1 ribonuclease Y -
  NYR47_RS19220 - 3762193..3762615 (-) 423 Protein_3737 recombinase RecA -
  NYR47_RS19225 - 3762884..3763507 (-) 624 WP_259416101.1 endonuclease domain-containing protein -
  NYR47_RS19230 recA 3763605..3764213 (-) 609 Protein_3739 recombinase RecA -
  NYR47_RS19235 cinA 3764358..3765596 (-) 1239 WP_259416102.1 competence/damage-inducible protein CinA Machinery gene
  NYR47_RS19240 pgsA 3765617..3766195 (-) 579 WP_001052980.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NYR47_RS19245 - 3766259..3767158 (-) 900 WP_000137456.1 helix-turn-helix domain-containing protein -
  NYR47_RS19250 - 3767180..3767965 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  NYR47_RS19255 - 3768104..3768352 (-) 249 WP_000114447.1 DUF3243 domain-containing protein -
  NYR47_RS19260 ymfI 3768428..3769141 (-) 714 WP_000759613.1 elongation factor P 5-aminopentanone reductase -
  NYR47_RS19265 yfmH 3769242..3770528 (-) 1287 WP_259416103.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45479.75 Da        Isoelectric Point: 5.2113

>NTDB_id=724792 NYR47_RS19235 WP_259416102.1 3764358..3765596(-) (cinA) [Bacillus toyonensis strain DC11]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMRPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSTKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=724792 NYR47_RS19235 WP_259416102.1 3764358..3765596(-) (cinA) [Bacillus toyonensis strain DC11]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGACATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGTTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAGGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATAGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTGCGTTTAACTGCGAAGCATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCAGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCGACAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379