Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NYR47_RS12380 Genome accession   NZ_CP103777
Coordinates   2418290..2418568 (+) Length   92 a.a.
NCBI ID   WP_000842219.1    Uniprot ID   -
Organism   Bacillus toyonensis strain DC11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2413290..2423568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS12360 - 2414055..2414657 (+) 603 WP_259417554.1 hypothetical protein -
  NYR47_RS12365 - 2415165..2416346 (+) 1182 WP_259417555.1 agmatine/peptidylarginine deiminase -
  NYR47_RS12370 - 2416772..2417023 (-) 252 WP_259417556.1 response regulator transcription factor -
  NYR47_RS12375 - 2417271..2418149 (+) 879 WP_000397971.1 helix-turn-helix domain-containing protein -
  NYR47_RS12380 abrB 2418290..2418568 (+) 279 WP_000842219.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NYR47_RS12385 - 2419042..2420292 (+) 1251 WP_259417557.1 hypothetical protein -
  NYR47_RS12390 - 2420360..2421118 (+) 759 WP_000347979.1 TSUP family transporter -
  NYR47_RS12395 - 2421371..2422030 (+) 660 WP_259417558.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10296.07 Da        Isoelectric Point: 9.6266

>NTDB_id=724789 NYR47_RS12380 WP_000842219.1 2418290..2418568(+) (abrB) [Bacillus toyonensis strain DC11]
MKSRGSTRKADSMGRIVIPMEIRRSLGIVEKDALEMFVEDDQIILRKYQSSQACAITGDISDKNISLANGKIIVSPEGTE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=724789 NYR47_RS12380 WP_000842219.1 2418290..2418568(+) (abrB) [Bacillus toyonensis strain DC11]
ATGAAATCAAGAGGGAGTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATGCGCTAGAAATGTTTGTGGAAGATGATCAGATTATTTTGCGGAAATATCAATCTTCACAAGCTT
GTGCAATTACAGGTGATATTTCAGATAAGAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAGAGGGAACAGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

53.333

97.826

0.522