Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NYR47_RS09920 Genome accession   NZ_CP103777
Coordinates   1933839..1934126 (+) Length   95 a.a.
NCBI ID   WP_259417332.1    Uniprot ID   -
Organism   Bacillus toyonensis strain DC11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1928839..1939126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS09900 - 1929969..1930118 (+) 150 WP_259417744.1 DUF4083 domain-containing protein -
  NYR47_RS09905 - 1930248..1930709 (+) 462 WP_087950154.1 NUDIX hydrolase -
  NYR47_RS09910 nadE 1930752..1931570 (-) 819 WP_259417329.1 ammonia-dependent NAD(+) synthetase -
  NYR47_RS09915 - 1931844..1933724 (+) 1881 WP_259417330.1 FtsX-like permease family protein -
  NYR47_RS09920 abrB 1933839..1934126 (+) 288 WP_259417332.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NYR47_RS09925 - 1934387..1935337 (+) 951 WP_259417333.1 serine protease -
  NYR47_RS09930 - 1935378..1935686 (-) 309 WP_001259900.1 helix-turn-helix transcriptional regulator -
  NYR47_RS09935 - 1935762..1936682 (+) 921 Protein_1867 aldo/keto reductase -
  NYR47_RS09940 - 1936929..1937153 (-) 225 WP_000162608.1 hypothetical protein -
  NYR47_RS09945 - 1937238..1937585 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  NYR47_RS09950 - 1937780..1938307 (+) 528 WP_259417334.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10634.42 Da        Isoelectric Point: 6.9802

>NTDB_id=724787 NYR47_RS09920 WP_259417332.1 1933839..1934126(+) (abrB) [Bacillus toyonensis strain DC11]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVDEDKVILQKYEPYNACQITGDVSNQNISLANGNITVSIDGAK
HLIKEIEKFLKKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=724787 NYR47_RS09920 WP_259417332.1 1933839..1934126(+) (abrB) [Bacillus toyonensis strain DC11]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTAAGAGATGTATTAGG
TATACAAATTAAATCACCACTTGAAATTTTCGTAGATGAAGATAAAGTCATTTTACAAAAATATGAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAGAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
CATTTAATAAAAGAAATAGAGAAGTTTTTAAAAAAAAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

95.789

0.526