Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NYR47_RS06610 Genome accession   NZ_CP103777
Coordinates   1288071..1288394 (-) Length   107 a.a.
NCBI ID   WP_000578873.1    Uniprot ID   A0A2B5EZM0
Organism   Bacillus toyonensis strain DC11     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1283071..1293394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS06585 - 1283334..1284620 (+) 1287 WP_259417074.1 D-alanyl-D-alanine carboxypeptidase family protein -
  NYR47_RS06590 sipW 1284816..1285385 (+) 570 WP_259417075.1 signal peptidase I SipW -
  NYR47_RS06595 - 1285450..1286037 (+) 588 WP_259417076.1 CalY family protein -
  NYR47_RS06600 - 1286158..1286973 (+) 816 WP_259417077.1 DUF4047 domain-containing protein -
  NYR47_RS06605 calY 1287394..1287987 (+) 594 WP_000053723.1 biofilm matrix protein CalY -
  NYR47_RS06610 sinR 1288071..1288394 (-) 324 WP_000578873.1 helix-turn-helix domain-containing protein Regulator
  NYR47_RS06615 - 1288474..1288608 (-) 135 WP_000276222.1 anti-repressor SinI family protein -
  NYR47_RS06620 inhA1 1288954..1291341 (+) 2388 WP_097954228.1 M6 family metalloprotease immune inhibitor InhA1 -
  NYR47_RS06625 - 1291499..1292866 (+) 1368 WP_259417078.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12389.26 Da        Isoelectric Point: 9.6238

>NTDB_id=724784 NYR47_RS06610 WP_000578873.1 1288071..1288394(-) (sinR) [Bacillus toyonensis strain DC11]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETEKEARLDSEWTQLV
KDAMNSGVSKEQFREFLEFTQWKKNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=724784 NYR47_RS06610 WP_000578873.1 1288071..1288394(-) (sinR) [Bacillus toyonensis strain DC11]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGACGAAACAGAAAAGGAAGCTCGCCTAGACTCCGAATGGACACAGCTCGTT
AAAGACGCAATGAACTCTGGTGTCTCTAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAGTGGAAGAAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B5EZM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

68.807

100

0.701