Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NYR47_RS06175 Genome accession   NZ_CP103777
Coordinates   1208097..1209923 (+) Length   608 a.a.
NCBI ID   WP_259417033.1    Uniprot ID   -
Organism   Bacillus toyonensis strain DC11     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1203097..1214923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS06155 - 1203401..1204075 (-) 675 WP_000362596.1 TerC family protein -
  NYR47_RS06160 mecA 1204421..1205104 (+) 684 WP_000402125.1 adaptor protein MecA Regulator
  NYR47_RS06165 - 1205177..1206721 (+) 1545 WP_000799211.1 cardiolipin synthase -
  NYR47_RS06170 - 1206802..1208046 (+) 1245 WP_259417032.1 competence protein CoiA -
  NYR47_RS06175 pepF 1208097..1209923 (+) 1827 WP_259417033.1 oligoendopeptidase F Regulator
  NYR47_RS06180 - 1210459..1211352 (-) 894 WP_000360648.1 ClpXP adapter SpxH family protein -
  NYR47_RS06185 - 1211352..1211750 (-) 399 WP_000043381.1 hypothetical protein -
  NYR47_RS06190 - 1211932..1212510 (-) 579 WP_259417034.1 CYTH domain-containing protein -
  NYR47_RS06195 - 1212655..1213026 (+) 372 WP_001180013.1 hypothetical protein -
  NYR47_RS06200 - 1213057..1213695 (+) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  NYR47_RS06205 - 1213713..1214510 (+) 798 WP_000673191.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70339.69 Da        Isoelectric Point: 4.6476

>NTDB_id=724783 NYR47_RS06175 WP_259417033.1 1208097..1209923(+) (pepF) [Bacillus toyonensis strain DC11]
MSEQNKAKTLPDRNEIEEANTWRLEDIFQTDAEWEKEFQAIKELLPQLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQAFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDDRRVREDAFKAVFETYGKFKNTFAST
LSGAVKRNNFNARIRKYDSARQAALGNNNIPEAVYDQLVETVNDHLHLLHRYIDIRKRALGLDELHMYDLYTPLVQEVKM
NVKYEEAQDMLLKSLNVLGDEYVEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=724783 NYR47_RS06175 WP_259417033.1 1208097..1209923(+) (pepF) [Bacillus toyonensis strain DC11]
ATGTCTGAACAAAATAAAGCAAAAACATTACCAGATCGCAATGAGATTGAAGAAGCAAATACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTTCAAGCGATTAAAGAGTTACTACCGCAGTTAACTGAATTTAAAGGGA
AGCTTGGTGACTCTGCGAACAACTTACTTGAGGCACTGCAATATGAGGATGAAATTTCAATGCGACTAGGTAAGCTATAT
ACATATGCTCATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCTTTAAATGATCGTGCGACGAATTTATA
TTCACAAGTATCTAGTAGCACAGCGTATATCGTACCTGAAATTTTATCTATTTCAGAAGATACACTGCAAGCATTTTTAA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACACGTCAACGTCCACACGTATTATCTGAGGCT
GAGGAAGCTTTATTAGCGGAAGCATCCGAAGTAATGAGTTCATCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCGTCTATTAAAGGCGAGGACGGAGAAGAAATAGAAATTACGCATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTTCGCGAAGATGCATTCAAAGCTGTATTTGAAACGTATGGGAAATTTAAGAACACATTTGCAAGTACG
TTAAGCGGAGCAGTGAAACGTAATAATTTCAATGCACGTATTCGTAAATATGACTCTGCTCGCCAAGCTGCATTGGGCAA
TAATAATATTCCTGAAGCAGTTTACGATCAACTCGTTGAAACGGTAAATGATCACTTACATTTATTGCACCGTTACATCG
ATATTCGAAAGCGTGCGCTAGGACTTGATGAACTTCATATGTACGATTTATATACACCACTTGTACAAGAAGTGAAAATG
AATGTGAAATATGAAGAAGCACAAGACATGTTATTAAAATCTTTAAACGTACTTGGTGATGAGTATGTTGAAATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATACG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCT
GTGCATAGTTATTACACAAGAAAGACACAGCCGCACGTATACGGTGATTATTCAATCTTCGTTGCAGAGGTAGCGTCAAC
TTGTAATGAAGCGCTTCTAAATGATTATTTATTAAAAACGACAGAAGATAAAAAAGAGCGCCTATATTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAAGGACATGCTGTTACGCCAGATATGTTAACGGAGATCTACTACGATTTAAATAAGAAATATTTCGGTGACGCTTTAGT
AATCGACGAAGAAATTGGGTTAGAATGGTCTCGCATTCCACACTTCTACTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAGATTTTAGAAGAAGGGCAACCAGCGGTAGAACGTTACATTAATGAATTC
TTAAAAGCAGGAAGCTCTGATTATCCAATTGAAGTGCTGAAAAAAGCAGGAGTTGATATGGCATCTCCTGAACCAGTGAA
AGAGGCACTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCGTTATTATTTGAAGAAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.747

97.533

0.485