Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NYR47_RS00220 Genome accession   NZ_CP103777
Coordinates   40448..40732 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus toyonensis strain DC11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35448..45732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS00185 tmk 35601..36227 (+) 627 WP_000677212.1 dTMP kinase -
  NYR47_RS00190 holB 36263..37246 (+) 984 WP_259416614.1 DNA polymerase III subunit delta' -
  NYR47_RS00195 - 37252..38079 (+) 828 WP_000272428.1 stage 0 sporulation family protein -
  NYR47_RS00200 yabA 38094..38444 (+) 351 WP_000412058.1 DNA replication initiation control protein YabA -
  NYR47_RS00205 - 38566..39306 (+) 741 WP_001055365.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NYR47_RS00210 - 39293..39583 (+) 291 WP_000414346.1 GIY-YIG nuclease family protein -
  NYR47_RS00215 rsmI 39552..40427 (+) 876 WP_000267798.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NYR47_RS00220 abrB 40448..40732 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NYR47_RS00225 metG 41240..43222 (+) 1983 WP_237672286.1 methionine--tRNA ligase -
  NYR47_RS00230 - 43391..44158 (+) 768 WP_000895828.1 TatD family hydrolase -
  NYR47_RS00235 rnmV 44378..44935 (+) 558 WP_000692838.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=724768 NYR47_RS00220 WP_000843036.1 40448..40732(-) (abrB) [Bacillus toyonensis strain DC11]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=724768 NYR47_RS00220 WP_000843036.1 40448..40732(-) (abrB) [Bacillus toyonensis strain DC11]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTTGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851