Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NYR47_RS00020 Genome accession   NZ_CP103777
Coordinates   3018..4145 (+) Length   375 a.a.
NCBI ID   WP_087969756.1    Uniprot ID   -
Organism   Bacillus toyonensis strain DC11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS00005 dnaA 1..1341 (+) 1341 WP_000428014.1 chromosomal replication initiator protein DnaA -
  NYR47_RS00010 dnaN 1520..2665 (+) 1146 WP_001212897.1 DNA polymerase III subunit beta -
  NYR47_RS00015 yaaA 2793..3005 (+) 213 WP_000821369.1 S4 domain-containing protein YaaA -
  NYR47_RS00020 recF 3018..4145 (+) 1128 WP_087969756.1 DNA replication/repair protein RecF Machinery gene
  NYR47_RS00025 gyrB 4185..6107 (+) 1923 WP_000435980.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  NYR47_RS00030 gyrA 6196..8667 (+) 2472 WP_098226821.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43347.61 Da        Isoelectric Point: 6.5997

>NTDB_id=724766 NYR47_RS00020 WP_087969756.1 3018..4145(+) (recF) [Bacillus toyonensis strain DC11]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNNS
LSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFDFLHLLQEWAAPIHRGISRGLEELEIIYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=724766 NYR47_RS00020 WP_087969756.1 3018..4145(+) (recF) [Bacillus toyonensis strain DC11]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAAGTGAATGT
AATTATCGGCGAAAATGCGCAAGGGAAAACAAATTTGATGGAAGCTATTTATGTGTTAGCGATGGCGAAATCTCATAGAA
CCTCCAATGACCGCGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGGAAATTACAAAAGAGAAATAATTCT
TTGTCTTTAGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTGAGTCAATA
TATTGGCGAAATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTTTATTTGTATGAATTAAGTCAATATCAAAAAGTGCTCACGCAACGA
AACCACTTGCTAAAAAAAATGCAAGGGAATAGTAAAAATGAGGAAACGATGTTGGATGTATTTACACTGCAACTGATTGA
ACACGGTGCAAAAATATTGCAAAAGCGTTTTGATTTTTTACATTTACTGCAAGAATGGGCAGCCCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTATTTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACTGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGCTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTGAAAGACGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653