Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYS49_RS08360 Genome accession   NZ_CP103771
Coordinates   1769835..1770440 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain S1905     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1764835..1775440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYS49_RS08340 (NYS49_08340) - 1765230..1766990 (-) 1761 WP_000156448.1 Lon protease family protein -
  NYS49_RS08345 (NYS49_08345) matP 1767176..1767628 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  NYS49_RS08350 (NYS49_08350) ompA 1767700..1768752 (-) 1053 WP_001670727.1 porin OmpA -
  NYS49_RS08355 (NYS49_08355) sulA 1769109..1769618 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  NYS49_RS08360 (NYS49_08360) sxy/tfoX 1769835..1770440 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  NYS49_RS08365 (NYS49_08365) yccS 1770427..1772580 (-) 2154 WP_023138531.1 YccS family putative transporter -
  NYS49_RS08370 (NYS49_08370) - 1772599..1773045 (-) 447 WP_001261222.1 YccF domain-containing protein -
  NYS49_RS08375 (NYS49_08375) helD 1773169..1775223 (+) 2055 WP_023138530.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=724748 NYS49_RS08360 WP_001202375.1 1769835..1770440(+) (sxy/tfoX) [Salmonella enterica strain S1905]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=724748 NYS49_RS08360 WP_001202375.1 1769835..1770440(+) (sxy/tfoX) [Salmonella enterica strain S1905]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTCCCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCACTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751