Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | PY718_RS13500 | Genome accession | NZ_CP119011 |
| Coordinates | 2786395..2787387 (+) | Length | 330 a.a. |
| NCBI ID | WP_000081550.1 | Uniprot ID | A0A370V765 |
| Organism | Escherichia coli strain CE0007a | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2781395..2792387
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PY718_RS13470 (PY718_13465) | ispD | 2781456..2782166 (+) | 711 | WP_000246141.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| PY718_RS13475 (PY718_13470) | ispF | 2782166..2782645 (+) | 480 | WP_155954684.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| PY718_RS13480 (PY718_13475) | truD | 2782642..2783691 (+) | 1050 | WP_000568953.1 | tRNA pseudouridine(13) synthase TruD | - |
| PY718_RS13485 (PY718_13480) | surE | 2783672..2784433 (+) | 762 | WP_001305779.1 | 5'/3'-nucleotidase SurE | - |
| PY718_RS13490 (PY718_13485) | pcm | 2784427..2785053 (+) | 627 | WP_000254708.1 | protein-L-isoaspartate O-methyltransferase | - |
| PY718_RS13495 (PY718_13490) | nlpD | 2785193..2786332 (+) | 1140 | WP_001272592.1 | murein hydrolase activator NlpD | - |
| PY718_RS13500 (PY718_13495) | rpoS | 2786395..2787387 (+) | 993 | WP_000081550.1 | RNA polymerase sigma factor RpoS | Regulator |
| PY718_RS13505 (PY718_13500) | - | 2787508..2787915 (-) | 408 | WP_001208065.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| PY718_RS13510 (PY718_13505) | - | 2788062..2788655 (+) | 594 | WP_001237176.1 | non-oxidative hydroxyarylic acid decarboxylases subunit B | - |
| PY718_RS13515 (PY718_13510) | - | 2788655..2790082 (+) | 1428 | WP_000863184.1 | non-oxidative hydroxyarylic acid decarboxylases subunit C | - |
| PY718_RS13520 (PY718_13515) | - | 2790093..2790329 (+) | 237 | WP_000562983.1 | non-oxidative hydroxyarylic acid decarboxylases subunit D | - |
| PY718_RS13525 (PY718_13520) | - | 2790371..2791579 (-) | 1209 | WP_001352368.1 | IS4-like element ISVsa5 family transposase | - |
| PY718_RS13530 (PY718_13525) | pphB | 2791709..2792365 (-) | 657 | WP_001139307.1 | protein-serine/threonine phosphatase | - |
Sequence
Protein
Download Length: 330 a.a. Molecular weight: 37972.84 Da Isoelectric Point: 4.5597
>NTDB_id=724740 PY718_RS13500 WP_000081550.1 2786395..2787387(+) (rpoS) [Escherichia coli strain CE0007a]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE
Nucleotide
Download Length: 993 bp
>NTDB_id=724740 PY718_RS13500 WP_000081550.1 2786395..2787387(+) (rpoS) [Escherichia coli strain CE0007a]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGACGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
GAAAGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCTGAAGAGGAGCTGTTATCGCAAGGGGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCGCCACTGTTAACGGCCGAAGAAGAAGTTTATTTCGCG
CGTCGCGCACTGCGTGGAGATGTCGCTTCACGTCGCCGGATGATTGAAAGTAACCTGCGTCTGGTCGTGAAGATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGCTGTTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATCCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGACGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
GAAAGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCTGAAGAGGAGCTGTTATCGCAAGGGGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCGCCACTGTTAACGGCCGAAGAAGAAGTTTATTTCGCG
CGTCGCGCACTGCGTGGAGATGTCGCTTCACGTCGCCGGATGATTGAAAGTAACCTGCGTCTGGTCGTGAAGATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGCTGTTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATCCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
73.065 |
97.879 |
0.715 |