Detailed information NTG0724740

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: NYO93_RS17725
• Genome accession: NZ_CP103770
• Coordinates: 3581819..3582964 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain TH-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3576819..3587964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYO93_RS17705 (NYO93_17705)	-	3577716..3578144 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
NYO93_RS17710 (NYO93_17710)	-	3578298..3578810 (+)	513	Protein_3433	bacteriocin biosynthesis protein AlbG	-
NYO93_RS17715 (NYO93_17715)	-	3578817..3580193 (-)	1377	WP_032875890.1	YncE family protein	-
NYO93_RS17720 (NYO93_17720)	-	3580233..3581588 (-)	1356	WP_032875887.1	YncE family protein	-
NYO93_RS17725 (NYO93_17725)	rapF	3581819..3582964 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
NYO93_RS17730 (NYO93_17730)	-	3582948..3583067 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
NYO93_RS17735 (NYO93_17735)	speB	3583190..3584062 (-)	873	WP_032875884.1	agmatinase	-
NYO93_RS17740 (NYO93_17740)	speE	3584121..3584951 (-)	831	WP_003151052.1	spermidine synthase	-
NYO93_RS17745 (NYO93_17745)	-	3585151..3587223 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
NYO93_RS17750 (NYO93_17750)	-	3587248..3587681 (-)	434	Protein_3441	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=724740 NYO93_RS17725 WP_074534220.1 3581819..3582964(+) (rapF) [Bacillus velezensis strain TH-1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=724740 NYO93_RS17725 WP_074534220.1 3581819..3582964(+) (rapF) [Bacillus velezensis strain TH-1]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541