Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYO93_RS08680 Genome accession   NZ_CP103770
Coordinates   1782706..1783140 (+) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus velezensis strain TH-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1777706..1788140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYO93_RS08675 (NYO93_08675) - 1781206..1782417 (-) 1212 WP_032875233.1 cytochrome P450 -
  NYO93_RS08680 (NYO93_08680) nucA/comI 1782706..1783140 (+) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYO93_RS08685 (NYO93_08685) - 1783200..1783954 (+) 755 Protein_1657 YoaK family protein -
  NYO93_RS08690 (NYO93_08690) - 1783988..1784351 (-) 364 Protein_1658 hypothetical protein -
  NYO93_RS08695 (NYO93_08695) - 1784544..1785872 (-) 1329 WP_032874981.1 S8 family peptidase -
  NYO93_RS08700 (NYO93_08700) - 1786051..1786284 (+) 234 WP_032875236.1 hypothetical protein -
  NYO93_RS08705 (NYO93_08705) - 1786540..1787247 (+) 708 WP_032874983.1 poly-gamma-glutamate hydrolase family protein -
  NYO93_RS08710 (NYO93_08710) - 1787308..1787760 (+) 453 WP_032874985.1 OsmC family protein -
  NYO93_RS08715 (NYO93_08715) - 1787774..1788128 (-) 355 Protein_1663 DMT family transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=724704 NYO93_RS08680 WP_007611576.1 1782706..1783140(+) (nucA/comI) [Bacillus velezensis strain TH-1]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=724704 NYO93_RS08680 WP_007611576.1 1782706..1783140(+) (nucA/comI) [Bacillus velezensis strain TH-1]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATAGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486