Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NYO93_RS07170 Genome accession   NZ_CP103770
Coordinates   1373088..1373684 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain TH-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1368088..1378684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYO93_RS07140 (NYO93_07140) - 1368299..1368754 (+) 456 WP_032874735.1 flavodoxin -
  NYO93_RS07145 (NYO93_07145) dapD 1368836..1369546 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NYO93_RS07150 (NYO93_07150) - 1369617..1370741 (+) 1125 WP_032874737.1 N-acetyldiaminopimelate deacetylase -
  NYO93_RS07155 (NYO93_07155) - 1370802..1371047 (+) 246 WP_003154596.1 YkuS family protein -
  NYO93_RS07160 (NYO93_07160) - 1371082..1371888 (-) 807 WP_032874739.1 mechanosensitive ion channel family protein -
  NYO93_RS07165 (NYO93_07165) - 1372177..1372635 (+) 459 WP_032874741.1 TlpA disulfide reductase family protein -
  NYO93_RS07170 (NYO93_07170) rok 1373088..1373684 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  NYO93_RS07175 (NYO93_07175) - 1373708..1374700 (-) 993 WP_032874743.1 hypothetical protein -
  NYO93_RS07180 (NYO93_07180) - 1374846..1375448 (+) 603 WP_032874745.1 molybdenum cofactor guanylyltransferase -
  NYO93_RS07185 (NYO93_07185) - 1375500..1376519 (+) 1020 WP_032874747.1 molybdopterin-synthase adenylyltransferase MoeB -
  NYO93_RS07190 (NYO93_07190) glp 1376537..1377829 (+) 1293 WP_032874748.1 gephyrin-like molybdotransferase Glp -
  NYO93_RS07195 (NYO93_07195) mobB 1377790..1378311 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=724698 NYO93_RS07170 WP_003154591.1 1373088..1373684(+) (rok) [Bacillus velezensis strain TH-1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=724698 NYO93_RS07170 WP_003154591.1 1373088..1373684(+) (rok) [Bacillus velezensis strain TH-1]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843