Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PY721_RS22905 Genome accession   NZ_CP119008
Coordinates   4754800..4755405 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CE0011b     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4749800..4760405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY721_RS22875 (PY721_22875) rsmS 4750505..4750666 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  PY721_RS22880 (PY721_22880) priC 4750680..4751207 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  PY721_RS22885 (PY721_22885) ybaN 4751277..4751654 (+) 378 WP_001188905.1 DUF454 family protein -
  PY721_RS22890 (PY721_22890) apt 4751807..4752358 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PY721_RS22895 (PY721_22895) dnaX 4752487..4754418 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  PY721_RS22900 (PY721_22900) ybaB 4754471..4754800 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PY721_RS22905 (PY721_22905) recR 4754800..4755405 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PY721_RS22910 (PY721_22910) htpG 4755515..4757389 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  PY721_RS22915 (PY721_22915) adk 4757570..4758214 (+) 645 WP_001220233.1 adenylate kinase -
  PY721_RS22920 (PY721_22920) hemH 4758450..4759412 (+) 963 WP_001250103.1 ferrochelatase -
  PY721_RS22925 (PY721_22925) aes 4759409..4760368 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=724682 PY721_RS22905 WP_001195025.1 4754800..4755405(+) (recR) [Escherichia coli strain CE0011b]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=724682 PY721_RS22905 WP_001195025.1 4754800..4755405(+) (recR) [Escherichia coli strain CE0011b]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443