Detailed information NTG0724677

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: NYO93_RS02015
• Genome accession: NZ_CP103770
• Coordinates: 396860..398008 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain TH-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 391860..403008

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYO93_RS01995 (NYO93_01995)	-	392263..392946 (-)	684	WP_032872874.1	ABC transporter ATP-binding protein	-
NYO93_RS02000 (NYO93_02000)	-	392961..394391 (-)	1431	WP_032872876.1	ABC transporter permease	-
NYO93_RS02005 (NYO93_02005)	-	394604..395287 (+)	684	WP_032872879.1	response regulator transcription factor	-
NYO93_RS02010 (NYO93_02010)	-	395274..396707 (+)	1434	WP_161503657.1	HAMP domain-containing sensor histidine kinase	-
NYO93_RS02015 (NYO93_02015)	rapC	396860..398008 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
NYO93_RS02020 (NYO93_02020)	phrC	397992..398111 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
NYO93_RS02025 (NYO93_02025)	-	398262..398372 (-)	111	WP_369878517.1	YjcZ family sporulation protein	-
NYO93_RS02030 (NYO93_02030)	-	398452..399816 (-)	1365	WP_007609394.1	aspartate kinase	-
NYO93_RS02035 (NYO93_02035)	ceuB	400230..401183 (+)	954	WP_032872883.1	ABC transporter permease	Machinery gene
NYO93_RS02040 (NYO93_02040)	-	401173..402120 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
NYO93_RS02045 (NYO93_02045)	-	402114..402872 (+)	759	WP_007609404.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=724677 NYO93_RS02015 WP_007410270.1 396860..398008(+) (rapC) [Bacillus velezensis strain TH-1]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=724677 NYO93_RS02015 WP_007410270.1 396860..398008(+) (rapC) [Bacillus velezensis strain TH-1]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTACCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAGGGGCTTCTCGATTATTACGTCAATTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCATGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGACACATATAACGTCCGGATTATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568