Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NYR93_RS14985 Genome accession   NZ_CP103769
Coordinates   3110174..3111286 (-) Length   370 a.a.
NCBI ID   WP_264254713.1    Uniprot ID   -
Organism   Bacillus velezensis strain ML61     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3105174..3116286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR93_RS14970 (NYR93_14975) gyrA 3105260..3107719 (-) 2460 WP_004392898.1 DNA gyrase subunit A -
  NYR93_RS14975 (NYR93_14980) gyrB 3107935..3109851 (-) 1917 WP_004392900.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  NYR93_RS14980 (NYR93_14985) remB 3109911..3110156 (-) 246 WP_264254712.1 extracellular matrix regulator RemB -
  NYR93_RS14985 (NYR93_14990) recF 3110174..3111286 (-) 1113 WP_264254713.1 DNA replication/repair protein RecF Machinery gene
  NYR93_RS14990 (NYR93_14995) rlbA 3111302..3111517 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  NYR93_RS14995 (NYR93_15000) dnaN 3111652..3112788 (-) 1137 WP_004392911.1 DNA polymerase III subunit beta -
  NYR93_RS15000 (NYR93_15005) dnaA 3112973..3114313 (-) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  NYR93_RS15005 (NYR93_15010) rpmH 3114935..3115069 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  NYR93_RS15010 (NYR93_15015) rnpA 3115224..3115574 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42504.45 Da        Isoelectric Point: 7.0880

>NTDB_id=724654 NYR93_RS14985 WP_264254713.1 3110174..3111286(-) (recF) [Bacillus velezensis strain ML61]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVARRLQFTAQLEKWAQPIHYGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=724654 NYR93_RS14985 WP_264254713.1 3110174..3111286(-) (recF) [Bacillus velezensis strain ML61]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAGGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGAAGAT
TTCTCGATATGGAGATCGGTCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAGACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTACGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTCTGAAGCTGGCTGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943