Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYR93_RS13245 Genome accession   NZ_CP103769
Coordinates   2790188..2790625 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain ML61     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2785188..2795625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR93_RS13230 (NYR93_13235) - 2788046..2788408 (-) 363 WP_014304320.1 helix-turn-helix domain-containing protein -
  NYR93_RS13235 (NYR93_13240) hxlA 2788640..2789275 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  NYR93_RS13240 (NYR93_13245) hxlB 2789272..2789829 (+) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  NYR93_RS13245 (NYR93_13250) nucA/comI 2790188..2790625 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYR93_RS13250 (NYR93_13255) comJ 2790647..2791044 (+) 398 Protein_2593 competence protein ComJ -
  NYR93_RS13255 (NYR93_13260) - 2791085..2791303 (-) 219 Protein_2594 family 1 glycosylhydrolase -
  NYR93_RS20065 - 2791302..2791580 (-) 279 WP_107890409.1 family 1 glycosylhydrolase -
  NYR93_RS13265 (NYR93_13270) - 2791522..2791797 (-) 276 WP_369719109.1 YckD family protein -
  NYR93_RS13270 (NYR93_13275) - 2791914..2792348 (-) 435 WP_003156592.1 RDD family protein -
  NYR93_RS13275 (NYR93_13280) - 2792363..2793499 (-) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  NYR93_RS13280 (NYR93_13285) - 2793564..2794766 (-) 1203 WP_024084872.1 GTP-binding protein -
  NYR93_RS13285 (NYR93_13290) - 2794880..2795044 (+) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=724648 NYR93_RS13245 WP_003156588.1 2790188..2790625(+) (nucA/comI) [Bacillus velezensis strain ML61]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=724648 NYR93_RS13245 WP_003156588.1 2790188..2790625(+) (nucA/comI) [Bacillus velezensis strain ML61]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641