Detailed information NTG0724632

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PY721_RS10185
• Genome accession: NZ_CP119008
• Coordinates: 2092070..2093062 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CE0011b
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2087070..2098062

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PY721_RS10165 (PY721_10165)	otnK	2087845..2089107 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
PY721_RS10170 (PY721_10170)	ygbL	2089104..2089742 (+)	639	WP_001278994.1	aldolase	-
PY721_RS10175 (PY721_10175)	ygbM	2089747..2090523 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
PY721_RS10180 (PY721_10180)	ygbN	2090612..2091976 (+)	1365	WP_000104441.1	GntP family transporter	-
PY721_RS10185 (PY721_10185)	rpoS	2092070..2093062 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PY721_RS10190 (PY721_10190)	nlpD	2093125..2094219 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PY721_RS10195 (PY721_10195)	pcm	2094404..2095030 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PY721_RS10200 (PY721_10200)	surE	2095024..2095785 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PY721_RS10205 (PY721_10205)	truD	2095766..2096815 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
PY721_RS10210 (PY721_10210)	ispF	2096812..2097291 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PY721_RS10215 (PY721_10215)	ispD	2097291..2098001 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=724632 PY721_RS10185 WP_000081550.1 2092070..2093062(-) (rpoS) [Escherichia coli strain CE0011b]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=724632 PY721_RS10185 WP_000081550.1 2092070..2093062(-) (rpoS) [Escherichia coli strain CE0011b]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715